@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00144_AMPC_E: (2014-08-29 )
MMRKSLCCALLLGISCSALATPVSEKQLAEVVANTITPLMKAQSVPGMAVAVIYQGKPHYYTFGKADIAANKPVTPQTLFELGSISKTFTGVLGGDAIARGEISLDDAVTRYWPQLTGKQWQGIRMLDLATYTAGGLPLQVPDEVTDNASLLRFYQNWQPQWKPGTTRLYANASIGLFGALAVKPSGMPYEQAMTTRVLKPLKLDHTWINVPKAEEAHYAWGYRDGKAVRVSPGMLDAQAYGVKTNVQDMANWVMANMAPENVADASLKQGIALAQSRYWRIGSMYQGLGWEMLNWPVEANTVVEGSDSKVALAPLPVAEVNPPAPPVKASWVHKTGSTGGFGSYVAFIPEKQIGIVMLANTSYPNPARVEAAYHILEALQ

Atome Classification :

(9 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PTX_A_2(1RGY)
AMPC_CITFR
[Raw transfer]




IPP_B_4(1BLS)
AMPC_ENTCL
[Raw transfer]




AZR_B_4(1FR6)
?
[Raw transfer]




ZX0_A_2(2WZX)
AMPC_PSEAE
[Raw transfer]




CIT_D_4(1ZC2)
?
[Raw transfer]




BZB_A_3(1C3B)
AMPC_ECOLI
[Raw transfer]




APB_A_3(3BLS)
AMPC_ECOLI
[Raw transfer]




AZR_A_3(1FR6)
?
[Raw transfer]




ACY_A_11(1ZKJ)
?
[Raw transfer]




MPD_A_3(1RGY)
AMPC_CITFR
[Raw transfer]




AZR_B_4(1FR6)
?
[Raw transfer]




21 PsiBlast_CBE 98.37100%-109 - C2 -1BLS 4.6 AMPC_ENTCL
16 PsiBlast_PDB 91.6475%-107 - C2 -1FR6 2.1 ?
23 PsiBlast_CBE 90.9975%-105 - C2 -1FR6 3.7 ?
22 PsiBlast_CBE 90.1675%-108 - C2 -1ZC2 4.2 ?
17 PsiBlast_PDB 89.3174%-106 - C2 -1RGY 4.3 AMPC_CITFR
20 PsiBlast_PDB 88.5770%-105 - C2 -1C3B 4.3 AMPC_ECOLI
19 PsiBlast_PDB 87.9670%-107 - C2 -3BLS 2.4 AMPC_ECOLI
36 HHSearch 78.2045% -99 - C2 -2WZX 3.7 AMPC_PSEAE
37 HHSearch 76.7446%-103 - C2 -1ZKJ 4.0 ?