@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00144_AMPC_P: (2014-08-29 )
MRDTRFPCLCGIAASTLLFATTPAIAGEAPADRLKALVDAAVQPVMKANDIPGLAVAISLKGEPHYFSYGLASKEDGRRVTPETLFEIGSVSKTFTATLAGYALTQDKMRLDDRASQHWPALQGSRFDGISLLDLATYTAGGLPLQFPDSVQKDQAQIRDYYRQWQPTYAPGSQRLYSNPSIGLFGYLAARSLGQPFERLMEQQVFPALGLEQTHLDVPEAALAQYAQGYGKDDRPLRVGPGPLDAEGYGVKTSAADLLRFVDANLHPERLDRPWAQALDATHRGYYKVGDMTQGLGWEAYDWPISLKRLQAGNSTPMALQPHRIARLPAPQALEGQRLLNKTGSTNGFGAYVAFVPGRDLGLVILANRNYPNAERVKIAYAILSGLEQQGKVPLKR

Atome Classification :

(17 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MK7_A_2(4NK3)
?
[Raw transfer]



ZX0_A_2(2WZX)
AMPC_PSEAE
[Raw transfer]



S1Y_A_2(3S1Y)
AMPC_PSEAE
[Raw transfer]



3S2_A_2(3S22)
AMPC_PSEAE
[Raw transfer]



ZX1_A_2(2WZZ)
AMPC_PSEAE
[Raw transfer]



NXL_A_4(4HEF)
AMPC_PSEAE
[Raw transfer]



ETP_A_6(1GA9)
AMPC_ECOLI
[Raw transfer]



CB4_A_4(1IEM)
AMPC_ECOLI
[Raw transfer]



MOX_A_3(1FCO)
AMPC_ECOLI
[Raw transfer]



STC_A_3(1L2S)
AMPC_ECOLI
[Raw transfer]



BZB_A_3(1C3B)
AMPC_ECOLI
[Raw transfer]



NPB_A_3(1KDS)
AMPC_ECOLI
[Raw transfer]



4CB_A_4(1KDW)
AMPC_ECOLI
[Raw transfer]



BDB_A_4(1KE3)
AMPC_ECOLI
[Raw transfer]



APB_A_3(3BLS)
AMPC_ECOLI
[Raw transfer]



CVB_A_4(1KE0)
AMPC_ECOLI
[Raw transfer]



IPA_A_4(3S1Y)
AMPC_PSEAE
[Raw transfer]



ACY_A_11(1ZKJ)
?
[Raw transfer]
6 PsiBlast_PDB 98.17100% -94 - C1 -4NK3 3.1 ?
1 PsiBlast_PDB 98.12100% -93 - C1 -2WZX 3.7 AMPC_PSEAE
2 PsiBlast_PDB 97.60100% -94 - C1 -2WZZ 3.5 AMPC_PSEAE
5 PsiBlast_PDB 97.13100% -93 - C1 -3S22 3.8 AMPC_PSEAE
7 PsiBlast_PDB 97.1099% -93 - C1 -4HEF 3.1 AMPC_PSEAE
4 PsiBlast_PDB 96.72100% -89 - C1 -3S1Y 5.3 AMPC_PSEAE
33 HHSearch 81.5357% -92 - C1 -1ZKJ 2.6 ?
10 PsiBlast_PDB 79.5543% -86 - C1 -1C3B 4.3 AMPC_ECOLI
15 PsiBlast_PDB 78.9543% -86 - C1 -1KDS 2.7 AMPC_ECOLI
16 PsiBlast_PDB 78.9443% -85 - C1 -1KDW 2.7 AMPC_ECOLI
13 PsiBlast_PDB 78.6643% -85 - C1 -1GA9 5.6 AMPC_ECOLI
18 PsiBlast_PDB 78.6143% -85 - C1 -1KE3 3.6 AMPC_ECOLI
17 PsiBlast_PDB 78.4243% -85 - C1 -1KE0 3.1 AMPC_ECOLI
9 PsiBlast_PDB 78.3743% -85 - C1 -3BLS 2.4 AMPC_ECOLI
12 PsiBlast_PDB 77.9443% -85 - C1 -1IEM 4.2 AMPC_ECOLI
11 PsiBlast_PDB 77.8543% -89 - C1 -1FCO 3.3 AMPC_ECOLI
20 PsiBlast_PDB 75.9943% -86 - C1 -1L2S 4.5 AMPC_ECOLI