@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00233_PDE2A_: (2014-09-02 )
MGQACGHSILCRSQQYPAARPAEPRGQQVFLKPDEPPPPPQPCADSLQDALLSLGSVIDISGLQRAVKEALSAVLPRVETVYTYLLDGESQLVCEDPPHELPQEGKVREAIISQKRLGCNGLGFSDLPGKPLARLVAPLAPDTQVLVMPLADKEAGAVAAVILVHCGQLSDNEEWSLQAVEKHTLVALRRVQVLQQRGPREAPRAVQNPPEGTAEDQKGGAAYTDRDRKILQLCGELYDLDASSLQLKVLQYLQQETRASRCCLLLVSEDNLQLSCKVIGDKVLGEEVSFPLTGCLGQVVEDKKSIQLKDLTSEDVQQLQSMLGCELQAMLCVPVISRATDQVVALACAFNKLEGDLFTDEDEHVIQHCFHYTSTVLTSTLAFQKEQKLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQNELVAKVFDGGVVDDESYEIRIPADQGIAGHVATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDEDLATAFSIYCGISIAHSLLYKKVNEAQYRSHLANEMMMYHMKVSDDEYTKLLHDGIQPVAAIDSNFASFTYTPRSLPEDDTSMAILSMLQDMNFINNYKIDCPTLARFCLMVKKGYRDPPYHNWMHAFSVSHFCYLLYKNLELTNYLEDIEIFALFISCMCHDLDHRGTNNSFQVASKSVLAALYSSEGSVMERHHFAQAIAILNTHGCNIFDHFSRKDYQRMLDLMRDIILATDLAHHLRIFKDLQKMAEVGYDRNNKQHHRLLLCLLMTSCDLSDQTKGWKTTRKIAELIYKEFFSQGDLEKAMGNRPMEMMDREKAYIPELQISFMEHIAMPIYKLLQDLFPKAAELYERVASNREHWTKVSHKFTIRGLPSNNSLDFLDEEYEVPDLDGTRAPINGCCSLDAE

Atome Classification :

(15 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MEW_A_3(4LLK)
?
[Raw transfer]



8ZE_A_3(4LM2)
?
[Raw transfer]



IBM_A_7(2R8Q)
?
[Raw transfer]



PF9_A_4(3HR1)

[Raw transfer]



9ZE_A_3(4LM3)
?
[Raw transfer]



7ZE_A_3(4LM1)
?
[Raw transfer]



VIA_A_4(1TBF)

[Raw transfer]



0JQ_A_12(4DDL)
PDE10_HUMAN
[Raw transfer]



4HN_A_5(4AEL)
PDE10_HUMAN
[Raw transfer]



JPZ_A_3(4LM4)
?
[Raw transfer]



5ZE_A_3(4LLX)
?
[Raw transfer]



CMP_A_5(2OUR)
PDE10_HUMAN
[Raw transfer]



CMP_A_5(2OUR)
PDE10_HUMAN
[Raw transfer]



1XN_A_3(4LLJ)
?
[Raw transfer]



WAN_A_4(3BJC)
PDE5A_HUMAN
[Raw transfer]



5NI_A_3(4LM0)
?
[Raw transfer]



4ZE_A_3(4LLP)
?
[Raw transfer]



EDO_A_23(1Y2K)
PDE4D_HUMAN
[Raw transfer]



EDO_A_24(1Y2K)
PDE4D_HUMAN
[Raw transfer]



ARS_A_7(1F0J)
PDE4B_HUMAN
[Raw transfer]



ARS_A_11(1F0J)
PDE4B_HUMAN
[Raw transfer]
48 HHSearch 51.0432%-112 - C1 -1TBF 4.8
49 HHSearch 49.7934%-109 - C1 -2OUR 4.6 PDE10_HUMAN
8 PsiBlast_PDB 48.6930%-119 - C1 -3BJC 4.7 PDE5A_HUMAN
47 HHSearch 48.4631%-111 - C1 -3HR1 5.3
15 PsiBlast_PDB 45.0541%-116 - C1 -4LM1 4.1 ?
13 PsiBlast_PDB 44.9641%-116 - C1 -4LLX 3.6 ?
11 PsiBlast_PDB 44.7141%-114 - C1 -4LLK 3.9 ?
14 PsiBlast_PDB 44.6441%-115 - C1 -4LM0 3.8 ?
18 PsiBlast_PDB 44.5041%-116 - C1 -4LM4 3.8 ?
19 PsiBlast_PDB 44.4741%-117 - C1 -4AEL 2.7 PDE10_HUMAN
16 PsiBlast_PDB 44.4441%-113 - C1 -4LM2 4.3 ?
12 PsiBlast_PDB 44.4441%-113 - C1 -4LLP 3.4 ?
20 PsiBlast_PDB 44.4141%-111 - C1 -4DDL 6.2 PDE10_HUMAN
10 PsiBlast_PDB 44.3441%-114 - C1 -4LLJ 3.3 ?
17 PsiBlast_PDB 44.1941%-114 - C1 -4LM3 4.7 ?