@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00233_PDE3B_: (2014-09-02 )
MRRDERDAKAMRSLQPPDGAGSPPESLRNGYVKSCVSPLRQDPPRGFFFHLCRFCNVELRPPPASPQQPRRCSPFCRARLSLGALAAFVLALLLGAEPESWAAGAAWLRTLLSVCSHSLSPLFSIACAFFFLTCFLTRTKRGPGPGRSCGSWWLLALPACCYLGDFLVWQWWSWPWGDGDAGSAAPHTPPEAAAGRLLLVLSCVGLLLTLAHPLRLRHCVLVLLLASFVWWVSFTSLGSLPSALRPLLSGLVGGAGCLLALGLDHFFQIREAPLHPRLSSAAEEKVPVIRPRRRSSCVSLGETAASYYGSCKIFRRPSLPCISREQMILWDWDLKQWYKPHYQNSGGGNGVDLSVLNEARNMVSDLLTDPSLPPQVISSLRSISSLMGAFSGSCRPKINPLTPFPGFYPCSEIEDPAEKGDRKLNKGLNRNSLPTPQLRRSSGTSGLLPVEQSSRWDRNNGKRPHQEFGISSQGCYLNGPFNSNLLTIPKQRSSSVSLTHHVGLRRAGVLSSLSPVNSSNHGPVSTGSLTNRSPIEFPDTADFLNKPSVILQRSLGNAPNTPDFYQQLRNSDSNLCNSCGHQMLKYVSTSESDGTDCCSGKSGEEENIFSKESFKLMETQQEEETEKKDSRKLFQEGDKWLTEEAQSEQQTNIEQEVSLDLILVEEYDSLIEKMSNWNFPIFELVEKMGEKSGRILSQVMYTLFQDTGLLEIFKIPTQQFMNYFRALENGYRDIPYHNRIHATDVLHAVWYLTTRPVPGLQQIHNGCGTGNETDSDGRINHGRIAYISSKSCSNPDESYGCLSSNIPALELMALYVAAAMHDYDHPGRTNAFLVATNAPQAVLYNDRSVLENHHAASAWNLYLSRPEYNFLLHLDHVEFKRFRFLVIEAILATDLKKHFDFLAEFNAKANDVNSNGIEWSNENDRLLVCQVCIKLADINGPAKVRDLHLKWTEGIVNEFYEQGDEEANLGLPISPFMDRSSPQLAKLQESFITHIVGPLCNSYDAAGLLPGQWLEAEEDNDTESGDDEDGEELDTEDEEMENNLNPKPPRRKSRRRIFCQLMHHLTENHKIWKEIVEEEEKCKADGNKLQVENSSLPQADEIQVIEEADEEE

Atome Classification :

(7 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AMP_A_8(1TB7)
PDE4D_HUMAN
[Raw transfer]



7DE_A_8(1Y2K)
PDE4D_HUMAN
[Raw transfer]



ROL_A_7(1TBB)
PDE4D_HUMAN
[Raw transfer]



IBM_A_4(1ZKL)
PDE7A_HUMAN
[Raw transfer]



CMP_A_5(2PW3)
PDE4D_HUMAN
[Raw transfer]



NPV_A_3(2QYN)
PDE4D_HUMAN
[Raw transfer]



ARS_A_7(1F0J)
PDE4B_HUMAN
[Raw transfer]



ARS_A_11(1F0J)
PDE4B_HUMAN
[Raw transfer]



EDO_A_10(1TBB)
PDE4D_HUMAN
[Raw transfer]



EDO_A_11(1TBB)
PDE4D_HUMAN
[Raw transfer]
33 Fugue 72.3130% -76 - C3 -1F0J 2.8 PDE4B_HUMAN
45 HHSearch 72.0832%-109 - C3 -1ZKL 5.0 PDE7A_HUMAN
46 HHSearch 69.3038%-107 - C3 -1Y2K 5.7 PDE4D_HUMAN
12 PsiBlast_PDB 67.4832%-104 - C3 -2PW3 4.5 PDE4D_HUMAN
5 PsiBlast_PDB 67.0432%-103 - C3 -2QYN 8.1 PDE4D_HUMAN
2 PsiBlast_PDB 67.0232%-105 - C3 -1TB7 4.5 PDE4D_HUMAN
3 PsiBlast_PDB 66.3332%-104 - C3 -1TBB 5.4 PDE4D_HUMAN