@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00233_PDE4B_: (2014-09-02 )
MKKSRSVMAVTADDNLKDYFECSLSKSYSSSSYTLGIDLWRGRRCCSGNLQLPPLSQRQSERARTPEGDGISRPTTLPLTTLPSIAITTVSQECFDVENGPSPGRSPLDPQASSSSGLVLHAAFPGHSQRRESFLYRSDSDYDLSPKAMSRNSSLPSEQHGDDLIVTPFAQVLASLRIVRNNFTLLTNLHGAPNKRSPAASQAPVTRVSLQEESYQKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQVSEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVNTENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFKISSDTFVTYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAVFTDLEILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEEHCDIFQNLTKKQRQTLRKMVIDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTKSLELYRQWTDRIMEEFFQQGDKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETWADLVQPDAQDILDTLEDNRNWYQSMIPQSPSPPLDERSRDCQGLMEKFQFELTLEEEDSEGPEKEGEGPNYFSSTKTLCVIDPENRDSLEETDIDIATEDKSLIDT

Atome Classification :

(54 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

8BR_A_7(1RO9)
PDE4B_HUMAN
[Raw transfer]



ROL_B_9(1RO6)
PDE4B_HUMAN
[Raw transfer]



ROL_A_8(1RO6)
PDE4B_HUMAN
[Raw transfer]



1S1_A_2(4KP6)
PDE4B_HUMAN
[Raw transfer]



8BR_B_8(1RO9)
PDE4B_HUMAN
[Raw transfer]



NVW_A_3(3W5E)
PDE4B_HUMAN
[Raw transfer]



988_A_5(3G45)
PDE4B_HUMAN
[Raw transfer]



AMP_A_7(1ROR)
PDE4B_HUMAN
[Raw transfer]



20A_A_4(3D3P)
PDE4B_HUMAN
[Raw transfer]



988_B_8(3G45)
PDE4B_HUMAN
[Raw transfer]



NVW_B_6(3W5E)
PDE4B_HUMAN
[Raw transfer]



AMP_B_7(1TB5)
PDE4B_HUMAN
[Raw transfer]



AMP_A_8(1TB5)
PDE4B_HUMAN
[Raw transfer]



AMP_B_8(1ROR)
PDE4B_HUMAN
[Raw transfer]



0CP_B_7(3KKT)
PDE4B_HUMAN
[Raw transfer]



19T_A_2(4MYQ)
PDE4B_HUMAN
[Raw transfer]



FIL_A_7(1XLZ)
PDE4B_HUMAN
[Raw transfer]



PIL_A_7(1XM4)
PDE4B_HUMAN
[Raw transfer]



ROL_B_8(1XMY)
PDE4B_HUMAN
[Raw transfer]



ZG2_A_7(3O57)
PDE4B_HUMAN
[Raw transfer]



GOL_A_10(3GWT)
PDE4B_HUMAN
[Raw transfer]



HBT_A_5(3HMV)
PDE4B_HUMAN
[Raw transfer]



HBT_B_9(3HMV)
PDE4B_HUMAN
[Raw transfer]



CIO_A_7(1XLX)
PDE4B_HUMAN
[Raw transfer]



0CP_A_4(3KKT)
PDE4B_HUMAN
[Raw transfer]



QPC_B_6(3WD9)
PDE4B_HUMAN
[Raw transfer]



5RM_A_7(1XM6)
PDE4B_HUMAN
[Raw transfer]



ZG1_A_7(3O56)
PDE4B_HUMAN
[Raw transfer]



QPC_A_3(3WD9)
PDE4B_HUMAN
[Raw transfer]



NPV_A_5(2QYL)
PDE4B_HUMAN
[Raw transfer]



066_A_2(3GWT)
PDE4B_HUMAN
[Raw transfer]



7DE_A_7(1Y2J)
PDE4B_HUMAN
[Raw transfer]



GOL_A_5(1TBF)

[Raw transfer]



SK4_A_2(3FRG)
PDE4B_HUMAN
[Raw transfer]



7DE_A_8(1Y2K)
PDE4D_HUMAN
[Raw transfer]



VDN_A_7(1XOT)
PDE4B_HUMAN
[Raw transfer]



ROF_A_7(1XMU)
PDE4B_HUMAN
[Raw transfer]



6DE_A_7(1Y2H)
PDE4B_HUMAN
[Raw transfer]



IBM_A_4(1ZKL)
PDE7A_HUMAN
[Raw transfer]



IBM_A_7(2R8Q)
?
[Raw transfer]



3OJ_A_4(3O0J)

[Raw transfer]



CIO_B_8(1XLX)
PDE4B_HUMAN
[Raw transfer]



VDN_B_8(1XOT)
PDE4B_HUMAN
[Raw transfer]



7DE_B_8(1Y2J)
PDE4B_HUMAN
[Raw transfer]



6DE_B_8(1Y2H)
PDE4B_HUMAN
[Raw transfer]



VIA_A_5(1XOS)
PDE4B_HUMAN
[Raw transfer]



5RM_B_8(1XM6)
PDE4B_HUMAN
[Raw transfer]



ROF_B_8(1XMU)
PDE4B_HUMAN
[Raw transfer]



ARS_A_11(1F0J)
PDE4B_HUMAN
[Raw transfer]



ARS_A_7(1F0J)
PDE4B_HUMAN
[Raw transfer]



ROL_B_9(1XN0)
PDE4B_HUMAN
[Raw transfer]



ARS_B_9(1F0J)
PDE4B_HUMAN
[Raw transfer]



FIL_B_8(1XLZ)
PDE4B_HUMAN
[Raw transfer]



ROL_A_7(1XN0)
PDE4B_HUMAN
[Raw transfer]



PIL_B_8(1XM4)
PDE4B_HUMAN
[Raw transfer]



ROL_A_7(1XMY)
PDE4B_HUMAN
[Raw transfer]
21 PsiBlast_CBE 99.2696%-111 - C7 -3G45 9.3 PDE4B_HUMAN
1 PsiBlast_PDB 98.4996%-111 - C7 -3G45 8.9 PDE4B_HUMAN
2 PsiBlast_PDB 92.8898%-113 - C7 -3W5E 10.5 PDE4B_HUMAN
66 Fugue 92.7298%-108 - C7 -1F0J 2.8 PDE4B_HUMAN
30 PsiBlast_CBE 92.3897%-108 - C7 -3HMV 6.9 PDE4B_HUMAN
38 PsiBlast_CBE 92.2998%-114 - C7 -4MYQ 8.6 PDE4B_HUMAN
10 PsiBlast_PDB 92.1497%-109 - C7 -3HMV 7.0 PDE4B_HUMAN
22 PsiBlast_CBE 92.0898%-113 - C7 -3WD9 9.7 PDE4B_HUMAN
3 PsiBlast_PDB 91.6498%-113 - C7 -3WD9 9.6 PDE4B_HUMAN
23 PsiBlast_CBE 91.5798%-111 - C7 -3W5E 10.4 PDE4B_HUMAN
28 PsiBlast_CBE 91.5597%-111 - C7 -1RO6 6.6 PDE4B_HUMAN
25 PsiBlast_CBE 91.3698%-113 - C7 -3KKT 7.5 PDE4B_HUMAN
6 PsiBlast_PDB 91.0297%-108 - C7 -1RO6 6.5 PDE4B_HUMAN
27 PsiBlast_CBE 90.6597%-114 - C7 -1RO9 5.0 PDE4B_HUMAN
26 PsiBlast_CBE 90.6397%-113 - C7 -1ROR 4.8 PDE4B_HUMAN
29 PsiBlast_CBE 90.5797%-114 - C7 -1F0J 2.8 PDE4B_HUMAN
8 PsiBlast_PDB 90.1497%-113 - C7 -1ROR 4.9 PDE4B_HUMAN
20 PsiBlast_PDB 90.0497%-114 - C7 -1XM6 6.3 PDE4B_HUMAN
5 PsiBlast_PDB 89.9698%-107 - C7 -3KKT 7.8 PDE4B_HUMAN
7 PsiBlast_PDB 89.9297%-113 - C7 -1RO9 5.6 PDE4B_HUMAN
48 PsiBlast_CBE 89.6497%-109 - C7 -3O56 7.4 PDE4B_HUMAN
50 PsiBlast_CBE 89.1397%-109 - C7 -3FRG 6.0 PDE4B_HUMAN
16 PsiBlast_PDB 88.8897%-115 - C7 -1XMU 7.5 PDE4B_HUMAN
52 PsiBlast_CBE 88.7599%-110 - C7 -2QYL 8.0 PDE4B_HUMAN
47 PsiBlast_CBE 88.6697%-111 - C7 -3O57 9.2 PDE4B_HUMAN
51 PsiBlast_CBE 88.6397%-111 - C7 -3D3P 7.6 PDE4B_HUMAN
49 PsiBlast_CBE 88.0897%-111 - C7 -3GWT 7.2 PDE4B_HUMAN
53 PsiBlast_CBE 87.3999%-112 - C7 -4KP6 6.2 PDE4B_HUMAN
11 PsiBlast_PDB 87.2398%-113 - C7 -1XLX 6.5 PDE4B_HUMAN
62 PsiBlast_CBE 87.1399%-114 - C7 -3O0J 4.7
18 PsiBlast_PDB 86.9697%-118 - C7 -1XLZ 6.0 PDE4B_HUMAN
13 PsiBlast_PDB 86.8198%-115 - C7 -1Y2H 5.4 PDE4B_HUMAN
4 PsiBlast_PDB 86.7198%-118 - C7 -1TB5 4.5 PDE4B_HUMAN
14 PsiBlast_PDB 86.5798%-113 - C7 -1Y2J 5.4 PDE4B_HUMAN
17 PsiBlast_PDB 86.5497%-117 - C7 -1XMY 6.5 PDE4B_HUMAN
12 PsiBlast_PDB 86.3098%-117 - C7 -1XOT 6.8 PDE4B_HUMAN
78 HHSearch 86.0986%-116 * C7 *1Y2K 6.0 PDE4D_HUMAN
24 PsiBlast_CBE 86.0298%-115 - C7 -1TB5 4.8 PDE4B_HUMAN
15 PsiBlast_PDB 86.0197%-114 - C7 -1XM4 7.6 PDE4B_HUMAN
80 HHSearch 72.3533% -97 - C7 -1ZKL 5.1 PDE7A_HUMAN
46 PsiBlast_CBE 68.5097% -14 - C7 -1XM6 4.4 PDE4B_HUMAN
88 HHSearch 67.3032% -93 - C7 -1TBF 2.4
84 HHSearch 67.2631% -91 - C7 -2R8Q 4.3 ?
43 PsiBlast_CBE 67.0897% -17 - C7 -1XOS 5.5 PDE4B_HUMAN
34 PsiBlast_CBE 66.2298% -28 - C7 -1XLX 3.4 PDE4B_HUMAN
31 PsiBlast_CBE 65.9698% -26 - C7 -1Y2J 2.3 PDE4B_HUMAN
32 PsiBlast_CBE 65.8598% -26 - C7 -1Y2H 3.4 PDE4B_HUMAN
33 PsiBlast_CBE 65.2898% -20 - C7 -1XOT 5.8 PDE4B_HUMAN
45 PsiBlast_CBE 65.2797% -16 - C7 -1XN0 3.4 PDE4B_HUMAN
44 PsiBlast_CBE 65.0597% -15 - C7 -1XN0 3.9 PDE4B_HUMAN
42 PsiBlast_CBE 62.5697% -3 - C7 -1XLZ 2.1 PDE4B_HUMAN
39 PsiBlast_CBE 62.5297% -3 - C7 -1XMY 2.1 PDE4B_HUMAN
41 PsiBlast_CBE 62.4197% -3 - C7 -1XM4 3.4 PDE4B_HUMAN
40 PsiBlast_CBE 61.5597% -2 - C7 -1XMU 3.1 PDE4B_HUMAN