@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00233_PDE5A_: (2014-09-02 )
MERAGPGSARPQQQWDQDSVEAWLDDHWDFTFSYFVRKGTREMVNAWFAERVHTIPVCKEGIKGHTESCSCPLQPSPRAESSVPGTPTRKISASEFDRPLRPIVIKDSEGTVSFLSDSDKKEQMPLTSPRFDNDEGDQCSRLLELVKDISSHLDVTALCHKIFLHIHGLISADRYSLFLVCEDSSNDKFLISRLFDVAEGSTLEEASNNCIRLEWNKGIVGHVAAFGEPLNIKDAYEDPRFNAEVDQITGYKTQSILCMPIKNHREEVVGVAQAINKKSGNGGTFTEKDEKDFAAYLAFCGIVLHNAQLYETSLLENKRNQVLLDLASLIFEEQQSLEVILKKIAATIISFMQVQKCTIFIVDEDCSDSFSSVFHMECEELEKSSDTLTRERDANRINYMYAQYVKNTMEPLNIPDVSKDKRFPWTNENMGNINQQCIRSLLCTPIKNGKKNKVIGVCQLVNKMEETTGKVKAFNRNDEQFLEAFVIFCGLGIQNTQMYEAVERAMAKQMVTLEVLSYHASAAEEETRELQSLAAAVVPSAQTLKITDFSFSDFELSDLETALCTIRMFTDLNLVQNFQMKHEVLCKWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQKRLTDLEILALLIAALSHDLDHRGVNNSYIQRSEHPLAQLYCHSIMEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFFELIMKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQRIAELVATEFFDQGDRERKELNIEPADLMNREKKNKIPSMQVGFIDAICLQLYEALTHVSEDCFPLLDGCRKNRQKWQALAEQQEKTLINGESSQTKRN

Atome Classification :

(34 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

VIA_A_4(1TBF)

[Raw transfer]




VIA_C_12(2H42)

[Raw transfer]




VDN_A_4(1UHO)

[Raw transfer]




VDN_A_4(1XP0)

[Raw transfer]




VIA_A_10(2H42)
PDE5A_HUMAN
[Raw transfer]




VIA_A_4(1UDT)

[Raw transfer]




VDN_A_3(3B2R)
PDE5A_HUMAN
[Raw transfer]




5EO_A_2(3TSE)

[Raw transfer]




NI0_A_2(4G2W)

[Raw transfer]




VDN_B_4(3B2R)

[Raw transfer]




WAN_A_4(3BJC)
PDE5A_HUMAN
[Raw transfer]




WAN_A_4(3BJC)
PDE5A_HUMAN
[Raw transfer]




5FO_A_2(3SHY)

[Raw transfer]




NI5_A_5(4G2Y)

[Raw transfer]




5BO_A_3(3SIE)
PDE5A_HUMAN
[Raw transfer]




5BB_A_2(4IA0)

[Raw transfer]




GOL_A_5(1TBF)

[Raw transfer]




5IO_A_2(3TSF)

[Raw transfer]




5BO_B_4(3SIE)

[Raw transfer]




VIA_B_11(2H42)
PDE5A_HUMAN
[Raw transfer]




5CO_A_2(3SHZ)

[Raw transfer]




IBM_A_4(1RKP)

[Raw transfer]




3P4_A_4(2CHM)

[Raw transfer]




TGE_A_4(3TGE)

[Raw transfer]




PD4_A_2(3HC8)

[Raw transfer]




7CA_A_4(2H44)

[Raw transfer]




0H3_A_4(3TGG)

[Raw transfer]




5GP_A_7(1T9S)
PDE5A_HUMAN
[Raw transfer]




IBM_B_12(3JWR)

[Raw transfer]




CIA_A_4(1XOZ)

[Raw transfer]




PD6_A_2(3HDZ)

[Raw transfer]




CIA_A_7(1UDU)
PDE5A_HUMAN
[Raw transfer]




5GP_B_8(1T9S)

[Raw transfer]




CIA_B_8(1UDU)

[Raw transfer]




IBM_A_7(3JWR)
PDE5A_HUMAN
[Raw transfer]




CMP_A_5(2OUR)
PDE10_HUMAN
[Raw transfer]




CHAIN_C_3(3JWR)
PDE5A_HUMAN
[Raw transfer]

-

CHAIN_D_4(3JWR)

[Raw transfer]

-

PEG_A_4(4G2W)

[Raw transfer]




PEG_A_2(4G2Y)

[Raw transfer]




5 PsiBlast_PDB 75.0398%-130 - C3 -3B2R 8.1 PDE5A_HUMAN
24 PsiBlast_CBE 74.2098%-126 - C3 -3SIE 6.2
20 PsiBlast_PDB 73.5998%-116 - C3 -1UHO 7.9
7 PsiBlast_PDB 73.5098%-112 - C3 -2H42 7.5 PDE5A_HUMAN
21 PsiBlast_CBE 73.4298%-129 - C3 -3B2R 7.7
22 PsiBlast_CBE 73.1598%-113 - C3 -2H42 7.8
11 PsiBlast_PDB 72.8898%-123 - C3 -3SIE 7.4 PDE5A_HUMAN
18 PsiBlast_PDB 72.8798%-114 - C3 -1UDT 7.7
12 PsiBlast_PDB 72.8498%-120 - C3 -3TSE 6.5
41 PsiBlast_CBE 72.8392%-113 - C3 -3HC8 8.4
37 PsiBlast_CBE 72.8292%-115 - C3 -3TGG 8.9
52 HHSearch 72.7896%-118 - C3 -3BJC 6.5 PDE5A_HUMAN
8 PsiBlast_PDB 72.7298%-113 - C3 -2H44 11.1
36 PsiBlast_CBE 72.5292%-111 - C3 -1T9S 4.5 PDE5A_HUMAN
27 PsiBlast_CBE 72.5091%-111 - C3 -1XOZ 8.5
34 PsiBlast_CBE 72.3992%-110 - C3 -1TBF 7.2
15 PsiBlast_PDB 72.3098%-124 - C3 -4G2Y 7.3
26 PsiBlast_CBE 72.2191%-111 - C3 -1XP0 8.2
38 PsiBlast_CBE 72.1792%-113 - C3 -3TGE 7.9
23 PsiBlast_CBE 72.1798%-109 - C3 -2H42 7.1 PDE5A_HUMAN
13 PsiBlast_PDB 72.0498%-124 - C3 -3TSF 7.7
35 PsiBlast_CBE 72.0192%-109 - C3 -1T9S 4.6
17 PsiBlast_PDB 71.7698%-118 - C3 -1RKP 5.6
40 PsiBlast_CBE 71.6592%-111 - C3 -3HDZ 7.7
9 PsiBlast_PDB 71.5598%-119 - C3 -3SHY 6.9
16 PsiBlast_PDB 71.4998%-124 - C3 -4IA0 8.4
14 PsiBlast_PDB 71.4398%-122 - C3 -4G2W 7.4
10 PsiBlast_PDB 71.4398%-120 - C3 -3SHZ 6.4
39 PsiBlast_CBE 71.4192%-111 - C3 -2CHM 8.5
29 PsiBlast_CBE 71.0892%-108 - C3 -3JWR 4.8 PDE5A_HUMAN (first)
28 PsiBlast_CBE 71.0092%-109 - C3 -3JWR 4.9
25 PsiBlast_CBE 70.7898%-114 - C3 -1UDU 8.3
19 PsiBlast_PDB 70.5398%-113 - C3 -1UDU 8.4 PDE5A_HUMAN
57 HHSearch 57.2439% -99 - C3 -2OUR 4.5 PDE10_HUMAN