@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00343_PYGL_H: (2014-09-05 )
AKPLTDQEKRRQISIRGIVGVENVAELKKSFNRHLHFTLVKDRNVATTRDYYFALAHTVRDHLVGRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDIEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEADDWLRYGNPWEKSRPEFMLPVHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVNTMRLWSARAPNDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKASKFGSTRGAGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWELTQKTFAYTNHTVLPEALERWPVDLVEKLLPRHLEIIYEINQKHLDRIVALFPKDVDRLRRMSLIEEEGSKRINMAHLCIVGSHAVNGVAKIHSDIVKTKVFKDFSELEPDKFQNKTNGITPRRWLLLCNPGLAELIAEKIGEDYVKDLSQLTKLHSFLGDDVFLRELAKVKQENKLKFSQFLETEYKVKINPSSMFDVQVKRIHEYKRQLLNCLHVITMYNRIKKDPKKLFVPRTVIIGGKAAPGYHMAKMIIKLITSVADVVNNDPMVGSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRIDDVAALDKKGYEAKEYYEALPELKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVFADYEAYVKCQDKVSQLYMNPKAWNTMVLKNIAASGKFSSDRTIKEYAQNIWNVEPSDLKISLSNESNKVNGN

Atome Classification :

(13 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

C3B_A_3(3BD8)
PYGM_RABIT
[Raw transfer]




8GP_E_5(2F3U)
PYGM_RABIT
[Raw transfer]




H53_E_5(2FET)
PYGM_RABIT
[Raw transfer]




6GP_E_5(2F3Q)
PYGM_RABIT
[Raw transfer]




7GP_E_5(2F3S)
PYGM_RABIT
[Raw transfer]




4GP_E_5(2F3P)
PYGM_RABIT
[Raw transfer]




H53_E_5(2FF5)
PYGM_RABIT
[Raw transfer]




GLC_C_3(2GPA)
PYGM_RABIT
[Raw transfer]




GLC_C_3(1FA9)
PYGL_HUMAN
[Raw transfer]




PLP_A_5(1FA9)
PYGL_HUMAN
[Raw transfer]




PLP_A_2(3BD8)
PYGM_RABIT
[Raw transfer]




PLP_A_2(3BDA)
PYGM_RABIT
[Raw transfer]




PLP_A_3(2F3U)
PYGM_RABIT
[Raw transfer]




PLP_A_3(2F3P)
PYGM_RABIT
[Raw transfer]




PLR_A_10(2GJ4)
PYGM_RABIT
[Raw transfer]




PLP_A_3(2F3Q)
PYGM_RABIT
[Raw transfer]




PLP_C_3(2FET)
PYGM_RABIT
[Raw transfer]




PLP_A_3(2F3S)
PYGM_RABIT
[Raw transfer]




PLP_C_3(2FF5)
PYGM_RABIT
[Raw transfer]




PLP_A_6(2GPA)
PYGM_RABIT
[Raw transfer]




PLP_A_2(3BD7)
PYGM_RABIT
[Raw transfer]




PLP_A_3(2QLL)
PYGL_HUMAN
[Raw transfer]




35 PsiBlast_CBE 94.9980% -92 - C5 -2GPA 3.9 PYGM_RABIT
53 HHSearch 94.6381% -94 - C5 -2GJ4 3.8 PYGM_RABIT
32 PsiBlast_CBE 94.2480% -92 - C5 -3BDA 3.0 PYGM_RABIT
33 PsiBlast_CBE 94.1880% -92 - C5 -3BD8 6.4 PYGM_RABIT
34 PsiBlast_CBE 94.1180% -91 - C5 -3BD7 2.8 PYGM_RABIT
37 PsiBlast_CBE 93.8980% -91 - C5 -2FET 6.1 PYGM_RABIT
40 PsiBlast_CBE 93.8780% -93 - C5 -2F3Q 5.7 PYGM_RABIT
39 PsiBlast_CBE 93.8580% -92 - C5 -2F3S 6.0 PYGM_RABIT
38 PsiBlast_CBE 93.8380% -92 - C5 -2F3U 5.7 PYGM_RABIT
36 PsiBlast_CBE 93.8380% -92 - C5 -2FF5 5.8 PYGM_RABIT
41 PsiBlast_CBE 93.7280% -91 - C5 -2F3P 5.0 PYGM_RABIT
21 PsiBlast_CBE 79.1199% -11 - C5 -2QLL 2.1 PYGL_HUMAN
22 PsiBlast_CBE 68.7199% -10 - C5 -1FA9 Error PYGL_HUMAN