@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00343_PYGL_R: (2014-09-05 )
MAKPLTDQEKRRQISIRGIVGVENVAELKKGFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFNQKIREGWQVEEADDWLRHGNPWEKARPEFMLPVHFYGRVEHTQAGTKWVDTQVVLALPYDTPVPGYMNNTVNTMRLWSARAPNDFNLQDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDVIRRFKASKFGSKDGVGTVFDAFPDQVAIQLNDTHPALAIPELMRIFVDIEKLPWSKAWEITKKTFAYTNHTVLPEALERWPVDLVEKLLPRHLQIIYEINQKHLDRIVALFPKDIDRMRRMSLIEEEGGKRINMAHLCIVGCHAVNGVAKIHSDIVKTQVFKDFSELEPDKFQNKTNGITPRRWLLLCNPGLADLIAEKIGEDYVKDLSQLTKLHSFVGDDIFLREIAKVKQENKLKFSQFLEKEYKVKINPSSMFDVHVKRIHEYKRQLLNCLHVITMYNRIKKDPKKFFVPRTVIIGGKAAPGYHMAKMIIKLVTSVAEVVNNDPMVGSKLKVIFLENYRVSLAEKVIPATDLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRVDDVAALDKKGYEAKEYYEALPELKLVIDQIDNGFFSPNQPDLFKDIINMLFYHDRFKVFADYEAYVKCQEKVSQLYMNQKAWNTMVLRNIAASGKFSSDRTIREYAKDIWNMEPSDLKISLSKESSNGVNANGK

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

8GP_E_5(2F3U)
PYGM_RABIT
[Raw transfer]




C3B_A_3(3BD8)
PYGM_RABIT
[Raw transfer]




6GP_E_5(2F3Q)
PYGM_RABIT
[Raw transfer]




H53_E_5(2FET)
PYGM_RABIT
[Raw transfer]




7GP_E_5(2F3S)
PYGM_RABIT
[Raw transfer]




T68_A_2(3ZCU)
PYGM_RABIT
[Raw transfer]




VMP_A_5(3ZCT)
PYGM_RABIT
[Raw transfer]




4GP_E_5(2F3P)
PYGM_RABIT
[Raw transfer]




CAW_A_4(3ZCS)
PYGM_RABIT
[Raw transfer]




62N_A_3(3ZCQ)
PYGM_RABIT
[Raw transfer]




H53_E_5(2FF5)
PYGM_RABIT
[Raw transfer]




N85_A_3(3ZCV)
PYGM_RABIT
[Raw transfer]




GLC_C_3(2GPA)
PYGM_RABIT
[Raw transfer]




F85_A_4(3ZCR)
PYGM_RABIT
[Raw transfer]




F58_A_3(3ZCP)
PYGM_RABIT
[Raw transfer]




GOL_A_4(2AMV)
PYGM_RABIT
[Raw transfer]




GLC_C_3(1FA9)
PYGL_HUMAN
[Raw transfer]




PLP_A_3(2F3U)
PYGM_RABIT
[Raw transfer]




PLP_A_4(3ZCV)
PYGM_RABIT
[Raw transfer]




PLR_A_10(2GJ4)
PYGM_RABIT
[Raw transfer]




PLP_A_3(3ZCU)
PYGM_RABIT
[Raw transfer]




PLP_A_2(3BDA)
PYGM_RABIT
[Raw transfer]




PLP_A_2(3ZCT)
PYGM_RABIT
[Raw transfer]




PLP_A_2(3BD8)
PYGM_RABIT
[Raw transfer]




PLP_C_3(2FET)
PYGM_RABIT
[Raw transfer]




PLP_A_3(2F3Q)
PYGM_RABIT
[Raw transfer]




PLP_A_3(2F3P)
PYGM_RABIT
[Raw transfer]




PLP_C_3(2FF5)
PYGM_RABIT
[Raw transfer]




PLP_A_6(2GPA)
PYGM_RABIT
[Raw transfer]




PLP_A_3(2F3S)
PYGM_RABIT
[Raw transfer]




PLP_A_2(2AMV)
PYGM_RABIT
[Raw transfer]




PLP_A_3(2QLL)
PYGL_HUMAN
[Raw transfer]




PLP_A_3(3ZCR)
PYGM_RABIT
[Raw transfer]




PLP_A_2(3ZCP)
PYGM_RABIT
[Raw transfer]




PLP_A_2(3BD7)
PYGM_RABIT
[Raw transfer]




PLP_A_2(3ZCS)
PYGM_RABIT
[Raw transfer]




PLP_A_2(3ZCQ)
PYGM_RABIT
[Raw transfer]




PLP_A_5(1FA9)
PYGL_HUMAN
[Raw transfer]




9 PsiBlast_PDB 99.1294% -96 - C13 -1FA9 3.0 PYGL_HUMAN
4 PsiBlast_PDB 98.5194% -97 - C13 -2QLL 3.2 PYGL_HUMAN
45 PsiBlast_CBE 95.3880% -94 - C13 -2GPA 3.9 PYGM_RABIT
64 HHSearch 95.0981% -96 * C13 *2GJ4 3.8 PYGM_RABIT
52 PsiBlast_CBE 94.9180% -92 - C13 -2AMV 3.1 PYGM_RABIT
43 PsiBlast_CBE 94.7680% -94 - C13 -3BD8 6.4 PYGM_RABIT
36 PsiBlast_CBE 94.6880% -93 - C13 -3ZCU 5.9 PYGM_RABIT
42 PsiBlast_CBE 94.5880% -93 - C13 -3BDA 3.0 PYGM_RABIT
44 PsiBlast_CBE 94.5780% -93 - C13 -3BD7 2.8 PYGM_RABIT
41 PsiBlast_CBE 94.5680% -95 - C13 -3ZCS 6.6 PYGM_RABIT
48 PsiBlast_CBE 94.4780% -94 - C13 -2F3U 5.7 PYGM_RABIT
51 PsiBlast_CBE 94.4480% -93 - C13 -2F3P 5.0 PYGM_RABIT
39 PsiBlast_CBE 94.3880% -94 - C13 -3ZCQ 7.1 PYGM_RABIT
50 PsiBlast_CBE 94.3480% -94 - C13 -2F3Q 5.7 PYGM_RABIT
40 PsiBlast_CBE 94.3380% -95 - C13 -3ZCP 6.0 PYGM_RABIT
49 PsiBlast_CBE 94.3180% -93 - C13 -2F3S 6.0 PYGM_RABIT
47 PsiBlast_CBE 94.2780% -93 - C13 -2FET 6.1 PYGM_RABIT
35 PsiBlast_CBE 94.2580% -95 - C13 -3ZCV 6.8 PYGM_RABIT
46 PsiBlast_CBE 94.2380% -93 - C13 -2FF5 5.8 PYGM_RABIT
37 PsiBlast_CBE 94.0880% -95 - C13 -3ZCT 6.8 PYGM_RABIT
38 PsiBlast_CBE 94.0580% -94 - C13 -3ZCR 7.8 PYGM_RABIT