@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00348_ISPA_E: (2014-09-05 )
MDFPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQRNK

Atome Classification :

(18 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

RIS_A_10(1RQJ)
ISPA_ECOLI
[Raw transfer]



RIS_B_12(1RQJ)
ISPA_ECOLI
[Raw transfer]



DST_B_9(1RQI)
ISPA_ECOLI
[Raw transfer]



DST_A_10(1RQI)
ISPA_ECOLI
[Raw transfer]



IPE_A_3(4LFG)
?
[Raw transfer]



GST_A_4(4LLS)
?
[Raw transfer]



GST_A_4(4LLS)
?
[Raw transfer]



GOL_A_4(4F62)
?
[Raw transfer]



IPR_A_9(1RQJ)
ISPA_ECOLI
[Raw transfer]



IPR_A_12(1RQI)
ISPA_ECOLI
[Raw transfer]



GOL_A_4(4F62)
?
[Raw transfer]



IPR_B_11(1RQI)
ISPA_ECOLI
[Raw transfer]



GRG_A_3(2J1P)
GGPPS_SINAL
[Raw transfer]



DST_A_6(3OAB)
?
[Raw transfer]



IPR_B_11(1RQJ)
ISPA_ECOLI
[Raw transfer]



IPE_A_5(3PDE)
?
[Raw transfer]



IPE_A_3(4LLS)
?
[Raw transfer]



IPE_A_3(4LLT)
?
[Raw transfer]



PPV_A_6(3KRF)
?
[Raw transfer]



PPV_A_5(3KRP)
?
[Raw transfer]



PPV_A_6(3KRO)
?
[Raw transfer]



PPV_A_3(3NPK)
?
[Raw transfer]



IPE_A_5(3KRC)
?
[Raw transfer]



DMS_A_5(3ZMB)
?
[Raw transfer]



POP_A_3(3OYR)
?
[Raw transfer]



POP_A_3(3OYR)
?
[Raw transfer]



IPE_A_5(3KRO)
?
[Raw transfer]



PPV_A_5(3OAB)
?
[Raw transfer]



PPV_A_5(3KRF)
?
[Raw transfer]



6H6_A_4(3ZMB)
?
[Raw transfer]



6H6_A_3(3ZMB)
?
[Raw transfer]
1 PsiBlast_PDB 96.62100% -93 - C1 -1RQI 4.2 ISPA_ECOLI
2 PsiBlast_PDB 95.61100% -94 - C1 -1RQJ 4.8 ISPA_ECOLI
22 PsiBlast_CBE 95.04100% -94 - C1 -1RQJ 4.9 ISPA_ECOLI
21 PsiBlast_CBE 93.81100% -93 - C1 -1RQI 4.6 ISPA_ECOLI
36 HHSearch 69.7848% -96 - C1 -4F62 2.4 ?
7 PsiBlast_PDB 65.6051% -97 - C1 -3ZMB 3.6 ?
51 HHSearch 63.1843% -94 - C1 -2J1P 7.6 GGPPS_SINAL
44 HHSearch 60.5140% -80 - C1 -3PDE 5.1 ?
42 HHSearch 59.9043% -75 - C1 -4LLS 5.7 ?
10 PsiBlast_PDB 59.6043% -83 - C1 -4LLT 5.3 ?
15 PsiBlast_PDB 58.5042% -85 - C1 -3KRF 3.3 ?
18 PsiBlast_PDB 58.2842% -87 - C1 -3OAB 3.0 ?
45 HHSearch 58.0138% -73 - C1 -4LFG 4.0 ?
16 PsiBlast_PDB 57.8742% -86 - C1 -3KRO 3.0 ?
14 PsiBlast_PDB 57.4742% -84 - C1 -3KRC 2.8 ?
17 PsiBlast_PDB 56.3742% -83 - C1 -3KRP 3.4 ?
48 HHSearch 53.4436% -87 - C1 -3NPK 3.5 ?
53 HHSearch 52.3033% -95 - C1 -3OYR 3.4 ?