@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00413_MMP11_: (2014-09-06 )
MARAACLLRAISRVLLLPLPLLLLLLLLLPSPLMARARPPESHRHHPVKKGPRLLHAALPNTLTSVPASHWVPSPAGSSRPLRCGVPDLPDVLNARNRQKRFVLSGGRWEKTDLTYRILRFPWQLVREQVRQTVAEALQVWSEVTPLTFTEVHEGRADIMIDFARYWHGDNLPFDGPGGILAHAFFPKTHREGDVHFDYDETWTIGDNQGTDLLQVAAHEFGHVLGLQHTTAAKALMSPFYTFRYPLSLSPDDRRGIQHLYGRPQMAPTSPAPTLSSQAGTDTNEIALLEPETPPDVCETSFDAVSTIRGELFFFKAGFVWRLRSGRLQPGYPALASRHWQGLPSPVDAAFEDAQGQIWFFQGAQYWVYDGEKPVLGPAPLSKLGLQGSPVHAALVWGPEKNKIYFFRGGDYWRFHPRTQRVDNPVPRRSTDWRGVPSEIDAAFQDAEGYAYFLRGHLYWKFDPVKVKVLEGFPRPVGPDFFDCAEPANTFR

Atome Classification :

(14 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLH_A_5(1HFC)
MMP1_HUMAN
[Raw transfer]



RXP_F_(1HV5)
MMP11_MOUSE
[Raw transfer]



RXP_F_(1HV5)
MMP11_MOUSE
[Raw transfer]



RO4_A_7(2TCL)
MMP1_HUMAN
[Raw transfer]



HTA_A_8(1FBL)
MMP1_PIG
[Raw transfer]



BAT_A_6(1RM8)
MMP16_HUMAN
[Raw transfer]



0XX_A_9(4H1Q)
MMP9_HUMAN
[Raw transfer]



BSI_A_6(1I76)
MMP8_HUMAN
[Raw transfer]



GOL_A_9(4IN9)
?
[Raw transfer]



GOL_A_8(4IN9)
?
[Raw transfer]



CPS_A_25(1HV5)
MMP11_MOUSE
[Raw transfer]



HAE_A_8(3BA0)
MMP12_HUMAN
[Raw transfer]



HAE_A_8(3BA0)
MMP12_HUMAN
[Raw transfer]



CPS_B_26(1HV5)
MMP11_MOUSE
[Raw transfer]



CHAIN_B_2(4IN9)
?
[Raw transfer]
-
CHAIN_B_2(3AYU)
MMP2_HUMAN
[Raw transfer]
-
CHAIN_C_3(4FVL)
?
[Raw transfer]
-
CHAIN_W_5(4G0D)
MMP13_HUMAN
[Raw transfer]
-
7 PsiBlast_PDB 80.8536%-112 - C1 -4FVL 7.6 ?
8 PsiBlast_PDB 79.4536%-110 - C1 -4G0D 7.4 MMP13_HUMAN
4 PsiBlast_PDB 78.0739%-107 - C1 -1FBL 5.3 MMP1_PIG
38 HHSearch 73.0038%-103 - C1 -3BA0 2.3 MMP12_HUMAN
1 PsiBlast_PDB 54.94100%-107 - C1 -1HV5 4.0 MMP11_MOUSE
25 PsiBlast_CBE 54.91100%-105 - C1 -1HV5 3.9 MMP11_MOUSE
21 PsiBlast_CBE 52.29100%-100 - C1 -1HV5 10.2 MMP11_MOUSE
12 PsiBlast_PDB 41.0255% -96 - C1 -1HFC 6.4 MMP1_HUMAN
13 PsiBlast_PDB 40.4055% -90 - C1 -2TCL 5.8 MMP1_HUMAN
55 HHSearch 39.6551% -94 - C1 -3AYU 7.2 MMP2_HUMAN
52 HHSearch 39.6046% -98 - C1 -1RM8 7.0 MMP16_HUMAN
62 HHSearch 37.9849% -95 - C1 -1I76 7.6 MMP8_HUMAN
54 HHSearch 37.0643% -92 - C1 -4IN9 6.7 ?
53 HHSearch 36.3647% -91 - C1 -4H1Q 8.6 MMP9_HUMAN