@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00439_BRD3_H: (2014-09-07 )
MSTATTVAPAGIPATPGPVNPPPPEVSNPSKPGRKTNQLQYMQNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQMPQEEVELLPPAPKGKGRKPAAGAQSAGTQQVAAVSSVSPATPFQSVPPTVSQTPVIAATPVPTITANVTSVPVPPAAAPPPPATPIVPVVPPTPPVVKKKGVKRKADTTTPTTSAITASRSESPPPLSDPKQAKVVARRESGGRPIKPPKKDLEDGEVPQHAGKKGKLSEHLRYCDSILREMLSKKHAAYAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEPVEAPALPAPAAPMVSKGAESSRSSEESSSDSGSSDSEEERATRLAELQEQLKAVHEQLAALSQAPVNKPKKKKEKKEKEKKKKDKEKEKEKHKVKAEEEKKAKVAPPAKQAQQKKAPAKKANSTTTAGRQLKKGGKQASASYDSEEEEEGLPMSYDEKRQLSLDINRLPGEKLGRVVHIIQSREPSLRDSNPDEIEIDFETLKPTTLRELERYVKSCLQKKQRKPFSASGKKQAAKSKEELAQEKKKELEKRLQDVSGQLSSSKKPARKEKPGSAPSGGPSRLSSSSSSESGSSSSSGSSSDSSDSE

Atome Classification :

(56 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

S5B_A_5(4AKN)
BRD2_HUMAN
[Raw transfer]



S5B_B_8(4AKN)
BRD2_HUMAN
[Raw transfer]



A9N_A_7(4A9N)
BRD2_HUMAN
[Raw transfer]



P9I_A_4(4A9I)
BRD2_HUMAN
[Raw transfer]



WSH_C_7(2YDW)
BRD2_HUMAN
[Raw transfer]



A9P_C_11(4ALH)
BRD2_HUMAN
[Raw transfer]



73B_A_2(4BJX)
BRD4_HUMAN
[Raw transfer]



A9O_B_9(4A9O)
BRD2_HUMAN
[Raw transfer]



A9O_A_5(4A9O)
BRD2_HUMAN
[Raw transfer]



3PF_A_2(4DON)
BRD4_HUMAN
[Raw transfer]



A9O_C_10(4A9O)
BRD2_HUMAN
[Raw transfer]



A9P_A_6(4ALH)
BRD2_HUMAN
[Raw transfer]



A9N_B_12(4A9N)
BRD2_HUMAN
[Raw transfer]



A9P_B_9(4ALH)
BRD2_HUMAN
[Raw transfer]



WSH_B_5(2YDW)
BRD2_HUMAN
[Raw transfer]



TVP_A_6(4A9H)
BRD2_HUMAN
[Raw transfer]



TVP_B_8(4A9H)
BRD2_HUMAN
[Raw transfer]



TVP_C_9(4A9H)
BRD2_HUMAN
[Raw transfer]



P9M_C_8(4A9M)
BRD2_HUMAN
[Raw transfer]



P9M_A_4(4A9M)
BRD2_HUMAN
[Raw transfer]



1XA_A_4(4LR6)
BRD4_HUMAN
[Raw transfer]



P9M_B_7(4A9M)
BRD2_HUMAN
[Raw transfer]



WSH_A_4(2YDW)
BRD2_HUMAN
[Raw transfer]



3PF_A_4(4A9E)
BRD2_HUMAN
[Raw transfer]



3PF_B_9(4A9E)
BRD2_HUMAN
[Raw transfer]



P9I_C_9(4A9I)
BRD2_HUMAN
[Raw transfer]



3PF_C_12(4A9E)
BRD2_HUMAN
[Raw transfer]



GOL_A_2(3JVJ)
BRD4_MOUSE
[Raw transfer]



EAM_C_7(2YEK)
BRD2_HUMAN
[Raw transfer]



21Q_A_2(4LYW)
?
[Raw transfer]



JQ1_A_2(3S91)
BRD3_HUMAN
[Raw transfer]



2TA_B_7(4OGJ)
?
[Raw transfer]



1XB_A_2(4LRG)
BRD4_HUMAN
[Raw transfer]



MB3_B_7(4A9F)
BRD2_HUMAN
[Raw transfer]



CHAIN_D_2(3MUL)
BRD4_MOUSE
[Raw transfer]
-
MB3_C_9(4A9F)
BRD2_HUMAN
[Raw transfer]



MB3_A_4(4A9F)
BRD2_HUMAN
[Raw transfer]



EAM_B_5(2YEK)
BRD2_HUMAN
[Raw transfer]



EAM_A_4(2YEK)
BRD2_HUMAN
[Raw transfer]



1GH_A_4(4ALG)
BRD2_HUMAN
[Raw transfer]



1K0_A_2(4J3I)
?
[Raw transfer]



TYL_A_5(4A9J)
BRD2_HUMAN
[Raw transfer]



R78_A_4(4OGI)
?
[Raw transfer]



DMS_C_14(4A9N)
BRD2_HUMAN
[Raw transfer]



TYL_B_8(4A9J)
BRD2_HUMAN
[Raw transfer]



LOC_A_4(4LYS)
?
[Raw transfer]



EDO_B_5(2NXB)
BRD3_HUMAN
[Raw transfer]



2TA_A_5(4OGJ)
?
[Raw transfer]



TYL_C_10(4A9J)
BRD2_HUMAN
[Raw transfer]



DMS_C_9(4AKN)
BRD2_HUMAN
[Raw transfer]



EDO_A_2(2OUO)

[Raw transfer]



EDO_B_7(4A9J)
BRD2_HUMAN
[Raw transfer]



EDO_A_5(4A9E)
BRD2_HUMAN
[Raw transfer]



EDO_A_4(4A9J)
BRD2_HUMAN
[Raw transfer]



EDO_B_10(4A9E)
BRD2_HUMAN
[Raw transfer]



EDO_A_3(4J3I)
?
[Raw transfer]



R78_B_6(4OGI)
?
[Raw transfer]



EDO_A_4(2NXB)
BRD3_HUMAN
[Raw transfer]



R78_A_4(4OGI)
?
[Raw transfer]



CHAIN_D_2(3MUK)
BRD4_MOUSE
[Raw transfer]
-
CHAIN_C_2(3JVK)
BRD4_MOUSE
[Raw transfer]
-
2TA_A_5(4OGJ)
?
[Raw transfer]



CHAIN_P_2(1E6I)

[Raw transfer]
-
21 PsiBlast_CBE 82.99100% -88 - C7 -2NXB 2.4 BRD3_HUMAN
48 PsiBlast_CBE 82.2481% -87 - C7 -4DON 3.5 BRD4_HUMAN
50 PsiBlast_CBE 80.7480% -82 - C7 -3MUK 3.8 BRD4_MOUSE
51 PsiBlast_CBE 80.2480% -86 - C7 -3JVK 2.7 BRD4_MOUSE
56 PsiBlast_CBE 80.0980% -78 - C7 -4LYW 5.7 ?
53 PsiBlast_CBE 79.7280% -72 - C7 -4LRG 7.5 BRD4_HUMAN
60 PsiBlast_CBE 79.5480% -78 - C7 -4OGI 6.3 ?
77 HHSearch 79.4381% -81 - C7 -4J3I 5.1 ?
57 PsiBlast_CBE 79.3480% -80 - C7 -4OGJ 7.7 ?
58 PsiBlast_CBE 79.1080% -82 - C7 -4OGJ 7.0 ?
55 PsiBlast_CBE 78.7180% -88 - C7 -4LYS 4.9 ?
20 PsiBlast_PDB 78.4478% -77 - C7 -4BJX 8.4 BRD4_HUMAN
59 PsiBlast_CBE 77.8780% -79 - C7 -4OGI 2.2 ?
49 PsiBlast_CBE 77.6680% -85 - C7 -3MUL 3.5 BRD4_MOUSE
54 PsiBlast_CBE 77.5580% -82 - C7 -4LR6 4.2 BRD4_HUMAN
3 PsiBlast_PDB 77.09100%-114 - C7 -3S91 8.4 BRD3_HUMAN
52 PsiBlast_CBE 77.0480% -79 - C7 -3JVJ 2.5 BRD4_MOUSE
43 PsiBlast_CBE 76.3181%-109 - C7 -4AKN 7.0 BRD2_HUMAN
32 PsiBlast_CBE 75.8878% -98 - C7 -4A9M 6.0 BRD2_HUMAN
28 PsiBlast_CBE 74.9478%-114 - C7 -4A9O 4.8 BRD2_HUMAN
2 PsiBlast_PDB 74.84100% -97 - C7 -2NXB 2.1 BRD3_HUMAN
19 PsiBlast_PDB 74.5181% -98 - C7 -4AKN 6.9 BRD2_HUMAN
34 PsiBlast_CBE 74.0278%-100 - C7 -4A9J 2.7 BRD2_HUMAN
10 PsiBlast_PDB 74.0078%-100 - C7 -4A9J 2.9 BRD2_HUMAN
26 PsiBlast_CBE 73.9378%-111 - C7 -4ALH 4.7 BRD2_HUMAN
44 PsiBlast_CBE 73.9281%-112 - C7 -2YEK 7.8 BRD2_HUMAN
11 PsiBlast_PDB 73.8178% -97 - C7 -4A9M 6.2 BRD2_HUMAN
39 PsiBlast_CBE 73.7778%-110 - C7 -4A9F 2.7 BRD2_HUMAN
12 PsiBlast_PDB 73.5878% -99 - C7 -4A9N 5.9 BRD2_HUMAN
6 PsiBlast_PDB 73.4178% -97 - C7 -4A9E 4.0 BRD2_HUMAN
41 PsiBlast_CBE 73.3878% -97 - C7 -4A9E 4.2 BRD2_HUMAN
8 PsiBlast_PDB 73.0378% -96 - C7 -4A9H 5.0 BRD2_HUMAN
15 PsiBlast_PDB 72.3878% -94 - C7 -4ALG 7.6 BRD2_HUMAN
17 PsiBlast_PDB 72.3381%-107 - C7 -2YDW 7.7 BRD2_HUMAN
9 PsiBlast_PDB 72.2378%-101 - C7 -4A9I 5.0 BRD2_HUMAN
30 PsiBlast_CBE 72.2278% -96 - C7 -4A9N 6.0 BRD2_HUMAN
42 PsiBlast_CBE 71.8481%-110 - C7 -4AKN 3.4 BRD2_HUMAN
7 PsiBlast_PDB 71.7978%-110 - C7 -4A9F 2.7 BRD2_HUMAN
37 PsiBlast_CBE 71.7778%-116 - C7 -4A9H 5.0 BRD2_HUMAN
45 PsiBlast_CBE 71.7481%-117 - C7 -2YEK 7.6 BRD2_HUMAN
46 PsiBlast_CBE 71.7381%-112 - C7 -2YDW 8.7 BRD2_HUMAN
18 PsiBlast_PDB 71.3681% -97 - C7 -2YEK 7.6 BRD2_HUMAN
27 PsiBlast_CBE 71.3578%-111 - C7 -4A9O 4.4 BRD2_HUMAN
13 PsiBlast_PDB 70.9578% -93 - C7 -4A9O 4.7 BRD2_HUMAN
25 PsiBlast_CBE 70.8478%-110 - C7 -4ALH 4.2 BRD2_HUMAN
14 PsiBlast_PDB 70.7678%-107 - C7 -4ALH 4.5 BRD2_HUMAN
36 PsiBlast_CBE 70.7378%-111 - C7 -4A9H 4.8 BRD2_HUMAN
47 PsiBlast_CBE 70.7081%-111 - C7 -2YDW 8.2 BRD2_HUMAN
40 PsiBlast_CBE 70.3278%-110 - C7 -4A9E 3.5 BRD2_HUMAN
31 PsiBlast_CBE 70.3078%-114 - C7 -4A9M 6.4 BRD2_HUMAN
38 PsiBlast_CBE 70.0278%-113 - C7 -4A9F 2.6 BRD2_HUMAN
35 PsiBlast_CBE 69.9278%-112 - C7 -4A9I 5.2 BRD2_HUMAN
29 PsiBlast_CBE 69.8878%-111 - C7 -4A9N 3.6 BRD2_HUMAN
33 PsiBlast_CBE 69.4878%-113 - C7 -4A9J 3.0 BRD2_HUMAN
62 Fugue 62.1937% -98 - C7 -1E6I 4.2
79 HHSearch 59.0743% -84 - C7 -2OUO 2.0