@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00536_EPHA5_: (2014-09-11 )
MRGSGPRGAGRRRPPSGGGDTPITPASLAGCYSAPRRAPLWTCLLLCAALRTLLASPSNEVNLLDSRTVMGDLGWIAFPKNGWEEIGEVDENYAPIHTYQVCKVMEQNQNNWLLTSWISNEGASRIFIELKFTLRDCNSLPGGLGTCKETFNMYYFESDDQNGRNIKENQYIKIDTIAADESFTELDLGDRVMKLNTEVRDVGPLSKKGFYLAFQDVGACIALVSVRVYYKKCPSVVRHLAVFPDTITGADSSQLLEVSGSCVNHSVTDEPPKMHCSAEGEWLVPIGKCMCKAGYEEKNGTCQVCRPGFFKASPHIQSCGKCPPHSYTHEEASTSCVCEKDYFRRESDPPTMACTRPPSAPRNAISNVNETSVFLEWIPPADTGGRKDVSYYIACKKCNSHAGVCEECGGHVRYLPRQSGLKNTSVMMVDLLAHTNYTFEIEAVNGVSDLSPGARQYVSVNVTTNQAAPSPVTNVKKGKIAKNSISLSWQEPDRPNGIILEYEIKYFEKDQETSYTIIKSKETTITAEGLKPASVYVFQIRARTAAGYGVFSRRFEFETTPVFAASSDQSQIPVIAVSVTVGVILLAVVIGVLLSGSCCECGCGRASSLCAVAHPSLIWRCGYSKAKQDPEEEKMHFHNGHIKLPGVRTYIDPHTYEDPNQAVHEFAKEIEASCITIERVIGAGEFGEVCSGRLKLPGKRELPVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDTFLKKNDGQFTVIQLVGMLRGISAGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAFRKFTSASDVWSYGIVMWEVVSYGERPYWEMTNQDVIKAVEEGYRLPSPMDCPAALYQLMLDCWQKERNSRPKFDEIVNMLDKLIRNPSSLKTLVNASCRVSNLLAEHSPLGSGAYRSVGEWLEAIKMGRYTEIFMENGYSSMDAVAQVTLEDLRRLGVTLVGHQKKIMNSLQEMKVQLVNGMVPL

Atome Classification :

(36 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AS6_A_2(2XVD)

[Raw transfer]




ANP_D_4(1MQB)

[Raw transfer]




C07_A_2(4G2F)

[Raw transfer]




7X6_A_2(2VWZ)

[Raw transfer]




ADP_D_12(2HEN)

[Raw transfer]




7X4_A_2(2VWX)

[Raw transfer]




7X8_A_2(2VX1)

[Raw transfer]




1N1_A_2(2Y6O)

[Raw transfer]




X9F_A_2(2X9F)

[Raw transfer]




IHZ_A_2(3DKO)

[Raw transfer]




ADP_C_11(2HEN)
EPHB2_MOUSE
[Raw transfer]




7X5_A_2(2VWY)

[Raw transfer]




Q9G_A_8(2XYU)

[Raw transfer]




ADP_B_10(2HEN)
EPHB2_MOUSE
[Raw transfer]




GOL_A_6(2XYU)

[Raw transfer]




GOL_A_3(2Y6M)

[Raw transfer]




IFC_A_2(3DZQ)

[Raw transfer]




7X7_A_2(2VX0)

[Raw transfer]




ANP_A_3(2OZO)
ZAP70_HUMAN
[Raw transfer]




ANP_C_3(1MQB)
EPHA2_HUMAN
[Raw transfer]




ANP_A_2(4FL3)
KSYK_HUMAN
[Raw transfer]




32W_A_2(4BB4)

[Raw transfer]




ANP_A_3(2QO9)

[Raw transfer]




ANP_A_5(2QOC)

[Raw transfer]




ADP_A_9(2HEN)
EPHB2_MOUSE
[Raw transfer]




GOL_A_5(3KUL)
EPHA8_HUMAN
[Raw transfer]




STU_A_2(1U59)

[Raw transfer]




STU_A_3(2YN8)
EPHB4_HUMAN
[Raw transfer]




STU_B_4(2YN8)

[Raw transfer]




STU_A_3(3CBL)

[Raw transfer]




30K_A_2(4AW5)

[Raw transfer]




PP1_B_2(1QCF)
HCK_HUMAN
[Raw transfer]




03P_A_5(3POZ)

[Raw transfer]




ANP_D_4(1JPA)

[Raw transfer]




ANP_C_3(1JPA)
EPHB2_MOUSE
[Raw transfer]




CHAIN_B_2(3FXX)

[Raw transfer]

-

CHAIN_B_2(3FY2)

[Raw transfer]

-

CHAIN_B_2(3CBL)

[Raw transfer]

-

7 PsiBlast_PDB 73.9477%-107 - C3 -3FXX 7.7
8 PsiBlast_PDB 73.5577%-108 - C3 -3FY2 6.8
10 PsiBlast_PDB 72.9077%-108 - C3 -2QO9 4.1
18 PsiBlast_PDB 72.5578%-109 - C3 -4G2F 5.7
16 PsiBlast_PDB 72.2378%-106 - C3 -2QOC 5.2
17 PsiBlast_PDB 72.1778%-111 - C3 -3DZQ 10.8
24 PsiBlast_CBE 72.0988%-114 - C3 -2Y6O 7.6
25 PsiBlast_CBE 71.8388%-110 - C3 -2Y6M 2.6
28 PsiBlast_CBE 71.5888%-114 - C3 -2XYU 7.1
26 PsiBlast_CBE 71.2079%-108 - C3 -1JPA 4.2
27 PsiBlast_CBE 70.7879%-106 - C3 -1JPA 4.1 EPHB2_MOUSE
42 PsiBlast_CBE 70.6675%-104 - C3 -2VX1 7.3
46 PsiBlast_CBE 70.3275%-103 - C3 -2VWX 6.4
22 PsiBlast_CBE 70.1981%-105 - C3 -3DKO 8.4
45 PsiBlast_CBE 70.0675%-102 - C3 -2VWY 6.7
44 PsiBlast_CBE 70.0475%-100 - C3 -2VWZ 7.5
41 PsiBlast_CBE 69.8975%-104 - C3 -2X9F 6.3
43 PsiBlast_CBE 69.7575%-103 - C3 -2VX0 7.4
39 PsiBlast_CBE 69.7175%-108 - C3 -4BB4 6.6
32 PsiBlast_CBE 69.4081%-104 - C3 -2HEN 5.0 EPHB2_MOUSE
34 PsiBlast_CBE 69.2381%-105 - C3 -2HEN 4.7 EPHB2_MOUSE
33 PsiBlast_CBE 68.5081%-105 - C3 -2HEN 5.5 EPHB2_MOUSE
31 PsiBlast_CBE 68.4881%-104 - C3 -2HEN 5.6
47 PsiBlast_CBE 68.1575%-106 - C3 -4AW5 7.5
40 PsiBlast_CBE 68.0375%-102 - C3 -2XVD 7.0
37 PsiBlast_CBE 67.7475%-110 - C3 -2YN8 8.9
35 PsiBlast_CBE 67.7274%-108 - C3 -1MQB 4.5
68 HHSearch 66.8474%-104 - C3 -3KUL 2.9 EPHA8_HUMAN
38 PsiBlast_CBE 66.6375%-111 - C3 -2YN8 8.5 EPHB4_HUMAN
36 PsiBlast_CBE 65.8374%-105 - C3 -1MQB 4.0 EPHA2_HUMAN
81 HHSearch 59.9637% -98 - C3 -4FL3 6.0 KSYK_HUMAN
79 HHSearch 57.7640%-100 - C3 -2OZO 5.6 ZAP70_HUMAN
71 HHSearch 56.4641% -96 - C3 -3CBL 8.6
76 HHSearch 56.0644% -98 - C3 -1QCF 6.6 HCK_HUMAN
80 HHSearch 55.9140%-100 - C3 -1U59 5.8
72 HHSearch 55.0736% -97 - C3 -3POZ 10.6