@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00536_EPHA8_: (2014-09-11 )
MAPARGRLPPALWVVTAAAAAATCVSAARGEVNLLDTSTIHGDWGWLTYPAHGWDSINEVDESFQPIHTYQVCNVMSPNQNNWLRTSWVPRDGARRVYAEIKFTLRDCNSMPGVLGTCKETFNLYYLESDRDLGASTQESQFLKIDTIAADESFTGADLGVRRLKLNTEVRSVGPLSKRGFYLAFQDIGACLAILSLRIYYKKCPAMVRNLAAFSEAVTGADSSSLVEVRGQCVRHSEERDTPKMYCSAEGEWLVPIGKCVCSAGYEERRDACVACELGFYKSAPGDQLCARCPPHSHSAAPAAQACHCDLSYYRAALDPPSSACTRPPSAPVNLISSVNGTSVTLEWAPPLDPGGRSDITYNAVCRRCPWALSRCEACGSGTRFVPQQTSLVQASLLVANLLAHMNYSFWIEAVNGVSDLSPEPRRAAVVNITTNQAAPSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGKPRPRYDTRTIVWICLTLITGLVVLLLLLICKKRHCGYSKAFQDSDEEKMHYQNGQAPPPVFLPLHHPPGKLPEPQFYAEPHTYEEPGRAGRSFTREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSVEEGYRLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSPESLRATATVSRCPPPAFVRSCFDLRGGSGGGGGLTVGDWLDSIRMGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQTMRAQLTSTQ

Atome Classification :

(16 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_2(4FL3)
KSYK_HUMAN
[Raw transfer]




GOL_A_5(3KUL)
EPHA8_HUMAN
[Raw transfer]




ANP_A_5(2QOC)

[Raw transfer]




ANP_A_3(2OZO)
ZAP70_HUMAN
[Raw transfer]




Q9G_A_8(2XYU)

[Raw transfer]




GOL_A_3(2Y6M)

[Raw transfer]




ANP_C_3(1MQB)
EPHA2_HUMAN
[Raw transfer]




1N1_A_2(2Y6O)

[Raw transfer]




ANP_A_4(3FXX)

[Raw transfer]




IHZ_A_2(3DKO)

[Raw transfer]




ANP_A_3(2QO9)

[Raw transfer]




PP1_B_2(1QCF)
HCK_HUMAN
[Raw transfer]




STU_A_3(3CBL)

[Raw transfer]




STU_A_2(1U59)

[Raw transfer]




03P_A_5(3POZ)

[Raw transfer]




STU_B_2(1BYG)
CSK_HUMAN
[Raw transfer]




CHAIN_B_2(3CBL)

[Raw transfer]

-

1 PsiBlast_PDB 75.94100%-112 - C2 -3KUL 3.1 EPHA8_HUMAN
20 PsiBlast_PDB 72.0662%-113 - C2 -2QOC 5.3
12 PsiBlast_PDB 71.7258%-110 - C2 -3FXX 4.7
21 PsiBlast_CBE 71.4373%-117 - C2 -2Y6O 5.0
22 PsiBlast_CBE 71.1073%-113 - C2 -2Y6M 2.7
23 PsiBlast_CBE 70.5774%-117 - C2 -2XYU 7.4
9 PsiBlast_PDB 70.3059%-111 - C2 -2QO9 4.6
17 PsiBlast_PDB 69.9271%-104 - C2 -3DKO 8.4
44 HHSearch 64.5062%-107 - C2 -1MQB 4.0 EPHA2_HUMAN
54 HHSearch 60.0140%-105 - C2 -2OZO 5.5 ZAP70_HUMAN
55 HHSearch 59.8637%-103 - C2 -4FL3 6.0 KSYK_HUMAN
45 HHSearch 58.5842%-100 - C2 -3CBL 8.6
53 HHSearch 57.4139%-106 - C2 -1U59 5.6
46 HHSearch 55.3834%-100 - C2 -3POZ 10.6
51 HHSearch 55.0041%-101 - C2 -1QCF 6.6 HCK_HUMAN
25 Fugue 52.4742%-100 - C2 -1BYG 8.1 CSK_HUMAN