@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00536_EPHB4_: (2014-09-11 )
MELRVLLCWASLAAALEETLLNTKLETADLKWVTFPQVDGQWEELSGLDEEQHSVRTYEVCDVQRAPGQAHWLRTGWVPRRGAVHVYATLRFTMLECLSLPRAGRSCKETFTVFYYESDADTATALTPAWMENPYIKVDTVAAEHLTRKRPGAEATGKVNVKTLRLGPLSKAGFYLAFQDQGACMALLSLHLFYKKCAQLTVNLTRFPETVPRELVVPVAGSCVVDAVPAPGPSPSLYCREDGQWAEQPVTGCSCAPGFEAAEGNTKCRACAQGTFKPLSGEGSCQPCPANSHSNTIGSAVCQCRVGYFRARTDPRGAPCTTPPSAPRSVVSRLNGSSLHLEWSAPLESGGREDLTYALRCRECRPGGSCAPCGGDLTFDPGPRDLVEPWVVVRGLRPDFTYTFEVTALNGVSSLATGPVPFEPVNVTTDREVPPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQLDESEGWREQLALIAGTAVVGVVLVLVVIVVAVLCLRKQSNGREAEYSDKHGQYLIGHGTKVYIDPFTYEDPNEAVREFAKEIDVSYVKIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSFLRLNDGQFTVIQLVGMLRGIASGMRYLAEMSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTYTSSLGGKIPIRWTAPEAIAFRKFTSASDAWSYGIVMWEVMSFGERPYWDMSNQDVINAIEQDYRLPPPPDCPTSLHQLMLDCWQKDRNARPRFPQVVSALDKMIRNPASLKIVARENGGASHPLLDQRQPHYSAFGSVGEWLRAIKMGRYEESFAAAGFGSFELVSQISAEDLLRIGVTLAGHQKKILASVQHMKSQAKPG

Atome Classification :

(33 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

7X6_A_2(2VWZ)

[Raw transfer]




7X4_A_2(2VWX)

[Raw transfer]




AS6_A_2(2XVD)

[Raw transfer]




7X5_A_2(2VWY)

[Raw transfer]




7X8_A_2(2VX1)

[Raw transfer]




32W_A_2(4BB4)

[Raw transfer]




X9F_A_2(2X9F)

[Raw transfer]




7X7_A_2(2VX0)

[Raw transfer]




1N1_A_2(2Y6O)

[Raw transfer]




IHZ_A_2(3DKO)

[Raw transfer]




ANP_C_3(1MQB)
EPHA2_HUMAN
[Raw transfer]




GOL_A_3(2Y6M)

[Raw transfer]




GOL_A_6(2XYU)

[Raw transfer]




Q9G_A_8(2XYU)

[Raw transfer]




GOL_A_5(3KUL)
EPHA8_HUMAN
[Raw transfer]




STU_A_3(2YN8)
EPHB4_HUMAN
[Raw transfer]




ADP_D_12(2HEN)

[Raw transfer]




ADP_C_11(2HEN)
EPHB2_MOUSE
[Raw transfer]




STU_B_4(2YN8)

[Raw transfer]




30K_A_2(4AW5)

[Raw transfer]




ANP_A_2(4FL3)
KSYK_HUMAN
[Raw transfer]




ADP_B_10(2HEN)
EPHB2_MOUSE
[Raw transfer]




ANP_A_3(2OZO)
ZAP70_HUMAN
[Raw transfer]




STU_A_2(1U59)

[Raw transfer]




ANP_A_4(3FXX)

[Raw transfer]




ANP_A_3(3KEX)
ERBB3_HUMAN
[Raw transfer]




STU_A_3(3CBL)

[Raw transfer]




ADP_A_9(2HEN)
EPHB2_MOUSE
[Raw transfer]




ANP_A_3(2QO9)

[Raw transfer]




PP1_B_2(1QCF)
HCK_HUMAN
[Raw transfer]




ANP_D_4(1JPA)

[Raw transfer]




ANP_C_3(1JPA)
EPHB2_MOUSE
[Raw transfer]




03P_A_5(3POZ)

[Raw transfer]




CHAIN_B_2(3FXX)

[Raw transfer]

-

CHAIN_B_2(3FY2)

[Raw transfer]

-

CHAIN_B_2(3CBL)

[Raw transfer]

-

5 PsiBlast_PDB 81.1199%-110 - C1 -2VX1 7.3
1 PsiBlast_PDB 80.7199%-109 - C1 -2VWX 6.4
2 PsiBlast_PDB 80.2399%-106 - C1 -2VWY 6.9
3 PsiBlast_PDB 79.8699%-104 - C1 -2VWZ 7.6
8 PsiBlast_PDB 79.7899%-115 - C1 -4BB4 6.8
4 PsiBlast_PDB 79.6699%-108 - C1 -2VX0 7.3
6 PsiBlast_PDB 78.9399%-110 - C1 -2X9F 6.7
7 PsiBlast_PDB 78.6399%-108 - C1 -2XVD 6.9
21 PsiBlast_CBE 78.5798%-116 - C1 -2YN8 8.4
10 PsiBlast_PDB 78.55100%-112 - C1 -4AW5 7.4
22 PsiBlast_CBE 77.4583%-108 - C1 -1JPA 4.2
9 PsiBlast_PDB 76.8898%-118 - C1 -2YN8 8.4 EPHB4_HUMAN
11 PsiBlast_PDB 76.0883%-107 - C1 -1JPA 4.1 EPHB2_MOUSE
27 PsiBlast_CBE 75.8577%-104 - C1 -3DKO 8.4
18 PsiBlast_PDB 74.8267%-108 - C1 -3FY2 6.2
17 PsiBlast_PDB 74.6267%-105 - C1 -3FXX 7.8
32 PsiBlast_CBE 73.7877%-114 - C1 -2XYU 7.0
26 PsiBlast_CBE 73.6483%-107 - C1 -2HEN 4.8 EPHB2_MOUSE
25 PsiBlast_CBE 73.5483%-106 - C1 -2HEN 5.3 EPHB2_MOUSE
30 PsiBlast_CBE 73.4877%-109 - C1 -2Y6M 2.6
29 PsiBlast_CBE 73.3977%-112 - C1 -2Y6O 7.4
23 PsiBlast_CBE 73.3383%-106 - C1 -2HEN 5.6
24 PsiBlast_CBE 73.2183%-104 - C1 -2HEN 5.0 EPHB2_MOUSE
16 PsiBlast_PDB 72.0367%-105 - C1 -2QO9 3.9
53 HHSearch 69.5966%-106 - C1 -3KUL 2.9 EPHA8_HUMAN
54 HHSearch 67.6665%-105 - C1 -1MQB 4.3 EPHA2_HUMAN
63 HHSearch 60.7335%-103 - C1 -4FL3 6.0 KSYK_HUMAN
55 HHSearch 59.7340% -95 - C1 -3CBL 8.8
64 HHSearch 57.3241% -96 - C1 -2OZO 5.6 ZAP70_HUMAN
58 HHSearch 57.0943%-104 - C1 -1QCF 6.5 HCK_HUMAN
57 HHSearch 56.3036% -97 - C1 -3POZ 10.6
62 HHSearch 55.7341% -95 - C1 -1U59 5.8
61 HHSearch 55.3633% -83 - C1 -3KEX 5.1 ERBB3_HUMAN