@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00569_CBP_HUMAN: (2014-09-11 )
MAENLLDGPPNPKRAKLSSPGFSANDSTDFGSLFDLENDLPDELIPNGGELGLLNSGNLVPDAASKHKQLSELLRGGSGSSINPGIGNVSASSPVQQGLGGQAQGQPNSANMASLSAMGKSPLSQGDSSAPSLPKQAASTSGPTPAASQALNPQAQKQVGLATSSPATSQTGPGICMNANFNQTHPGLLNSNSGHSLINQASQGQAQVMNGSLGAAGRGRGAGMPYPTPAMQGASSSVLAETLTQVSPQMTGHAGLNTAQAGGMAKMGITGNTSPFGQPFSQAGGQPMGATGVNPQLASKQSMVNSLPTFPTDIKNTSVTNVPNMSQMQTSVGIVPTQAIATGPTADPEKRKLIQQQLVLLLHAHKCQRREQANGEVRACSLPHCRTMKNVLNHMTHCQAGKACQVAHCASSRQIISHWKNCTRHDCPVCLPLKNASDKRNQQTILGSPASGIQNTIGSVGTGQQNATSLSNPNPIDPSSMQRAYAALGLPYMNQPQTQLQPQVPGQQPAQPQTHQQMRTLNPLGNNPMNIPAGGITTDQQPPNLISESALPTSLGATNPLMNDGSNSGNIGTLSTIPTAAPPSSTGVRKGWHEHVTQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANSRDEYYHLLAEKIYKIQKELEEKRRSRLHKQGILGNQPALPAPGAQPPVIPQAQPVRPPNGPLSLPVNRMQVSQGMNSFNPMSLGNVQLPQAPMGPRAASPMNHSVQMNSMGSVPGMAISPSRMPQPPNMMGAHTNNMMAQAPAQSQFLPQNQFPSSSGAMSVGMGQPPAQTGVSQGQVPGAALPNPLNMLGPQASQLPCPPVTQSPLHPTPPPASTAAGMPSLQHTTPPGMTPPQPAAPTQPSTPVSSSGQTPTPTPGSVPSATQTQSTPTVQAAAQAQVTPQPQTPVQPPSVATPQSSQQQPTPVHAQPPGTPLSQAAASIDNRVPTPSSVASAETNSQQPGPDVPVLEMKTETQAEDTEPDPGESKGEPRSEMMEEDLQGASQVKEETDIAEQKSEPMEVDEKKPEVKVEVKEEEESSSNGTASQSTSPSQPRKKIFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQSLGYCCGRKYEFSPQTLCCYGKQLCTIPRDAAYYSYQNRYHFCEKCFTEIQGENVTLGDDPSQPQTTISKDQFEKKKNDTLDPEPFVDCKECGRKMHQICVLHYDIIWPSGFVCDNCLKKTGRPRKENKFSAKRLQTTRLGNHLEDRVNKFLRRQNHPEAGEVFVRVVASSDKTVEVKPGMKSRFVDSGEMSESFPYRTKALFAFEEIDGVDVCFFGMHVQEYGSDCPPPNTRRVYISYLDSIHFFRPRCLRTAVYHEILIGYLEYVKKLGYVTGHIWACPPSEGDDYIFHCHPPDQKIPKPKRLQEWYKKMLDKAFAERIIHDYKDIFKQATEDRLTSAKELPYFEGDFWPNVLEESIKELEQEEEERKKEESTAASETTEGSQGDSKNAKKKNNKKTNKNKSSISRANKKKPSMPNVSNDLSQKLYATMEKHKEVFFVIHLHAGPVINTLPPIVDPDPLLSCDLMDGRDAFLTLARDKHWEFSSLRRSKWSTLCMLVELHTQGQDRFVYTCNECKHHVETRWHCTVCEDYDLCINCYNTKSHAHKMVKWGLGLDDEGSSQGEPQSKSPQESRRLSIQRCIQSLVHACQCRNANCSLPSCQKMKRVVQHTKGCKRKTNGGCPVCKQLIALCCYHAKHCQENKCPVPFCLNIKHKLRQQQIQHRLQQAQLMRRRMATMNTRNVPQQSLPSPTSAPPGTPTQQPSTPQTPQPPAQPQPSPVSMSPAGFPSVARTQPPTTVSTGKPTSQVPAPPPPAQPPPAAVEAARQIEREAQQQQHLYRVNINNSMPPGRTGMGTPGSQMAPVSLNVPRPNQVSGPVMPSMPPGQWQQAPLPQQQPMPGLPRPVISMQAQAAVAGPRMPSVQPPRSISPSALQDLLRTLKSPSSPQQQQQVLNILKSNPQLMAAFIKQRTAKYVANQPGMQPQPGLQSQPGMQPQPGMHQQPSLQNLNAMQAGVPRPGVPPQQQAMGGLNPQGQALNIMNPGHNPNMASMNPQYREMLRRQLLQQQQQQQQQQQQQQQQQQGSAGMAGGMAGHGQFQQPQGPGGYPPAMQQQQRMQQHLPLQGSSMGQMAAQMGQLGQMGQPGLGADSTPNIQQALQQRILQQQQMKQQIGSPGQPNPMSPQQHMLSGQPQASHLPGQQIATSLSNQVRSPAPVQSPRPQSQPPHSSPSPRIQPQPSPHHVSPQTGSPHPGLAVTMASSIDQGHLGNPEQSAMLPQLNTPSRSALSSELSLVGDTTGDTLEKFVEGL

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

3PF_B_14(3P1F)

[Raw transfer]



15E_C_7(4NYV)
?
[Raw transfer]



15E_D_8(4NYV)
?
[Raw transfer]



15E_B_6(4NYV)
?
[Raw transfer]



3PF_A_7(3P1F)
CBP_HUMAN
[Raw transfer]



MB3_A_4(3P1D)
CBP_HUMAN
[Raw transfer]



DMS_A_4(3P1E)
CBP_HUMAN
[Raw transfer]



MB3_B_6(3P1D)

[Raw transfer]



2O3_A_3(4NYW)
?
[Raw transfer]



2LL_A_2(4NR5)

[Raw transfer]



2LK_A_3(4NR4)
CBP_HUMAN
[Raw transfer]



2O4_A_2(4NYX)
?
[Raw transfer]



15E_A_5(4NYV)
?
[Raw transfer]



KRG_A_4(3SVH)
CBP_HUMAN
[Raw transfer]



CHAIN_C_2(4N3W)
?
[Raw transfer]
-
ALY_A_3(3P1C)
CBP_HUMAN
[Raw transfer]



KRG_B_7(3SVH)

[Raw transfer]



ALY_B_5(3P1C)

[Raw transfer]



DMS_B_5(3P1E)

[Raw transfer]



2LO_A_5(4NR7)

[Raw transfer]



TYL_A_5(4A9K)
CBP_HUMAN
[Raw transfer]



2LN_A_2(4NR6)

[Raw transfer]



TYL_B_8(4A9K)

[Raw transfer]



CHAIN_A_1(1JSP)

[Raw transfer]
-
EDO_A_4(4NR4)
CBP_HUMAN
[Raw transfer]



EDO_A_3(3DWY)
CBP_HUMAN
[Raw transfer]



L85_A_2(2L85)

[Raw transfer]



EDO_A_5(3P1F)

[Raw transfer]



TTR_B_2(2D82)

[Raw transfer]



2LK_A_3(4NR4)

[Raw transfer]
3 PsiBlast_PDB 45.52100% -29 - C1 -4N3W 5.9 ?
9 PsiBlast_PDB 32.23100% 2 - C1 -3P1C 3.0 CBP_HUMAN
19 PsiBlast_PDB 31.90100% 4 - C1 -4NYV 4.3 ?
31 PsiBlast_CBE 31.86100% 4 - C1 -3SVH 4.8
17 PsiBlast_PDB 31.78100% 6 - C1 -4NR6 6.7
14 PsiBlast_PDB 31.75100% 7 - C1 -4A9K 3.3 CBP_HUMAN
13 PsiBlast_PDB 31.71100% 3 - C1 -3SVH 4.9 CBP_HUMAN
10 PsiBlast_PDB 31.71100% 6 - C1 -3P1D 2.7 CBP_HUMAN
28 PsiBlast_CBE 31.70100% 4 - C1 -4NYV 4.5 ?
25 PsiBlast_CBE 31.70100% 0 - C1 -4NYX 7.3 ?
8 PsiBlast_PDB 31.65100% 2 - C1 -3DWY 3.0 CBP_HUMAN
12 PsiBlast_PDB 31.63100% 5 - C1 -3P1F 4.2 CBP_HUMAN
20 PsiBlast_PDB 31.59100% 5 - C1 -4NYW 7.4 ?
34 PsiBlast_CBE 31.52100% 2 - C1 -3P1D 2.8
32 PsiBlast_CBE 31.37100% 6 - C1 -3P1F 4.0
18 PsiBlast_PDB 31.26100% 9 - C1 -4NR7 8.1
27 PsiBlast_CBE 31.25100% 6 - C1 -4NYV 4.7 ?
5 PsiBlast_PDB 31.2598% 2 - C1 -2D82 5.0
26 PsiBlast_CBE 31.21100% 2 - C1 -4NYV 4.6 ?
16 PsiBlast_PDB 31.18100% 9 - C1 -4NR5 6.9
30 PsiBlast_CBE 31.16100% -0 - C1 -4A9K 3.4
11 PsiBlast_PDB 31.16100% 4 - C1 -3P1E 3.6 CBP_HUMAN
33 PsiBlast_CBE 31.11100% 2 - C1 -3P1E 3.6
6 PsiBlast_PDB 31.0598% -3 - C1 -2L85 3.9
35 PsiBlast_CBE 30.89100% 6 - C1 -3P1C 2.6
29 PsiBlast_CBE 30.85100% 9 - C1 -4NR4 2.8
15 PsiBlast_PDB 30.65100% 12 - C1 -4NR4 8.0 CBP_HUMAN
4 PsiBlast_PDB 26.7098% 19 - C1 -1JSP Error