@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00704_CHIB_S: (2014-09-15 )
MSTRKAVIGYYFIPTNQINNYTETDTSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPAARTKFAQSCVRIMKDYGFDGVDIDWEYPQAAEVDGFIAALQEIRTLLNQQTIADGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKITNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPNADYWLVGCDECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRNGDLLAALDRYFNAADYDDSQLDMGTGLRYTGVGPGNLPIMTAPAYVPGTTYAQGALVSYQGYVWQTKWGYITSAPGSDSAWLKVGRLA

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AMI_B_10(1OGG)
CHIB_SERMA
[Raw transfer]




GDL_B_22(1UR8)
?
[Raw transfer]




SUGAR_B_12(1E6N)
CHIB_SERMA
[Raw transfer]

-

SUGAR_A_3(1E6N)
CHIB_SERMA
[Raw transfer]

-

GOL_A_6(3WD0)
CHIB_SERMA
[Raw transfer]




GOL_A_10(1W1P)
?
[Raw transfer]




GOL_A_7(3WD3)
CHIB_SERMA
[Raw transfer]




AMI_B_10(1E6R)
?
[Raw transfer]




GOL_B_11(1UR8)
?
[Raw transfer]




NGO_B_9(1E6Z)
?
[Raw transfer]




0HZ_B_23(1O6I)
CHIB_SERMA
[Raw transfer]




GIO_B_26(1W1P)
?
[Raw transfer]




CFF_A_2(3G6M)
?
[Raw transfer]




NAG_B_21(1UR8)
?
[Raw transfer]




SUGAR_B_9(1OGG)
CHIB_SERMA
[Raw transfer]

-

EDO_A_6(3ALF)
?
[Raw transfer]




MPD_A_3(2PI6)
CH3L1_SHEEP
[Raw transfer]




CFF_A_3(3G6M)
?
[Raw transfer]




NAG_B_10(1E6Z)
?
[Raw transfer]




TYP_B_23(1W1Y)
?
[Raw transfer]




4 PsiBlast_PDB 97.03100%-104 - C1 -3WD3 2.2 CHIB_SERMA
1 PsiBlast_PDB 97.00100%-101 - C1 -3WD0 2.6 CHIB_SERMA
3 PsiBlast_PDB 96.80100%-102 - C1 -3WD2 - CHIB_SERMA
2 PsiBlast_PDB 96.74100%-102 - C1 -3WD1 - CHIB_SERMA
14 PsiBlast_CBE 96.4998%-103 - C1 -1W1T - ?
5 PsiBlast_PDB 96.41100%-102 - C1 -3WD4 - CHIB_SERMA
20 PsiBlast_CBE 96.0698%-103 - C1 -1O6I 4.1 CHIB_SERMA
12 PsiBlast_CBE 95.9498%-104 - C1 -1W1V - ?
36 PsiBlast_CBE 95.9298%-101 - C1 -1E6Z 3.2 ?
29 PsiBlast_CBE 95.6598%-101 - C1 -1E6N 12.2 CHIB_SERMA
16 PsiBlast_CBE 95.6198%-103 - C1 -1W1P 3.8 ?
10 PsiBlast_CBE 95.5398%-100 - C1 -1W1Y 3.0 ?
28 PsiBlast_CBE 95.4398%-102 - C1 -1E6N 12.2 CHIB_SERMA
39 PsiBlast_CBE 95.3998%-101 - C1 -1UR9 - ?
26 PsiBlast_CBE 95.2898%-101 - C1 -1E6P - ?
38 PsiBlast_CBE 95.2798%-101 - C1 -1UR9 - ?
30 PsiBlast_CBE 95.1998%-101 - C1 -1OGG 4.1 CHIB_SERMA
18 PsiBlast_CBE 95.1998% -99 - C1 -1UR8 3.9 ?
8 PsiBlast_CBE 95.1798%-101 - C1 -1H0I - CHIB_SERMA
24 PsiBlast_CBE 95.0698%-102 - C1 -1E6R 4.5 ?
34 PsiBlast_CBE 94.9698%-100 - C1 -1GOI - CHIB_SERMA
32 PsiBlast_CBE 94.9298% -99 - C1 -1OGB - CHIB_SERMA
50 HHSearch 56.6739% -88 - C1 -1ITX - CHIA1_BACCI
54 HHSearch 51.3533% -81 - C1 -3G6M 5.4 ?
55 HHSearch 49.7330% -84 - C1 -1KFW - ?