@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00821_PCKGC_: (2014-09-16 )
MPPQLHNGLDFSAKVIQGSLDSLPQEVRKFVEGNAQLCQPEYIHICDGSEEEYGRLLAHMQEEGVIRKLKKYDNCWLALTDPRDVARIESKTVIITQEQRDTVPIPKSGQSQLGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLAKIGIELTDSPYVVASMRIMTRMGTSVLEALGDGEFIKCLHSVGCPLPLKKPLVNNWACNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRIASRLAKEEGWLAEHMLILGITNPEGKKKYLAAAFPSACGKTNLAMMNPTLPGWKVECVGDDIAWMKFDAQGNLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGIDEPLAPGVTITSWKNKEWRPQDEEPCAHPNSRFCTPASQCPIIDPAWESPEGVPIEGIIFGGRRPAGVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGKVIMHDPFAMRPFFGYNFGKYLAHWLSMAHRPAAKLPKIFHVNWFRKDKNGKFLWPGFGENSRVLEWMFGRIEGEDSAKLTPIGYVPKEDALNLKGLGDVNVEELFGISKEFWEKEVEEIDKYLEDQVNADLPYEIERELRALKQRISQM

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GCP_A_5(1KHB)
PCKGC_HUMAN
[Raw transfer]




GTP_C_12(3DT4)
PCKGC_RAT
[Raw transfer]




GTP_A_6(3DT2)
PCKGC_RAT
[Raw transfer]




GTP_A_11(3DT4)
PCKGC_RAT
[Raw transfer]




GCP_A_5(1KHB)
PCKGC_HUMAN
[Raw transfer]




GTP_A_2(4GMU)
PCKGC_RAT
[Raw transfer]




GTP_A_2(4GNQ)
PCKGC_RAT
[Raw transfer]




GTP_A_3(3MOF)
PCKGC_RAT
[Raw transfer]




GTP_A_2(4GNO)
PCKGC_RAT
[Raw transfer]




GTP_A_3(4GMZ)
PCKGC_RAT
[Raw transfer]




GTP_A_2(4GMM)
PCKGC_RAT
[Raw transfer]




PPF_A_7(2RK8)
PCKGC_RAT
[Raw transfer]




PGA_A_6(3MOH)
PCKGC_RAT
[Raw transfer]




PEP_A_4(4GNP)
PCKGC_RAT
[Raw transfer]




GTP_A_2(4GNM)
PCKGC_RAT
[Raw transfer]




PEP_A_6(4GNL)
PCKGC_RAT
[Raw transfer]




PEP_A_4(1KHF)
PCKGC_HUMAN
[Raw transfer]




PEP_A_5(4GMW)
PCKGC_RAT
[Raw transfer]




GDP_A_2(4GNP)
PCKGC_RAT
[Raw transfer]




SPV_A_6(4GNO)
PCKGC_RAT
[Raw transfer]




GDP_B_10(3MOH)
PCKGC_RAT
[Raw transfer]




GDP_A_5(4GNL)
PCKGC_RAT
[Raw transfer]




PPF_B_8(2RK8)
PCKGC_RAT
[Raw transfer]




PGA_B_13(3MOH)
PCKGC_RAT
[Raw transfer]




PEP_A_4(1NHX)
PCKGC_HUMAN
[Raw transfer]




GDP_A_3(3MOH)
PCKGC_RAT
[Raw transfer]




GDP_A_2(4GMW)
PCKGC_RAT
[Raw transfer]




FMT_B_11(2RK8)
PCKGC_RAT
[Raw transfer]




3PP_A_5(2RKD)
PCKGC_RAT
[Raw transfer]




SPV_A_6(4GMM)
PCKGC_RAT
[Raw transfer]




SAT_A_6(2RKE)
PCKGC_RAT
[Raw transfer]




PEP_B_6(2GMV)
PCKGC_HUMAN
[Raw transfer]




SPV_A_6(4GMZ)
PCKGC_RAT
[Raw transfer]




PEP_A_5(2GMV)
PCKGC_HUMAN
[Raw transfer]




TSX_A_4(1M51)
PCKGC_HUMAN
[Raw transfer]




UN8_A_7(2GMV)
PCKGC_HUMAN
[Raw transfer]




FTB_A_5(1NHX)
PCKGC_HUMAN
[Raw transfer]




CO2_A_5(2OLR)
PCKA_ECOLI
[Raw transfer]




CO2_A_4(2OLR)
PCKA_ECOLI
[Raw transfer]




9 PsiBlast_PDB 99.29100%-100 - C5 -2RKE 3.5 PCKGC_RAT
8 PsiBlast_PDB 99.27100% -99 - C5 -2RKD 2.8 PCKGC_RAT
10 PsiBlast_PDB 99.26100% -95 - C5 -3DT2 10.7 PCKGC_RAT
23 PsiBlast_CBE 99.13100% -95 - C5 -3DT4 10.6 PCKGC_RAT
6 PsiBlast_PDB 99.10100% -96 - C5 -2RK8 4.0 PCKGC_RAT
14 PsiBlast_PDB 98.6299% -95 - C5 -3MOF 8.1 PCKGC_RAT
11 PsiBlast_PDB 98.60100% -96 - C5 -3DT4 10.8 PCKGC_RAT
51 HHSearch 98.51100% -99 - C5 -4GMU 9.7 PCKGC_RAT
31 PsiBlast_CBE 98.4398%-102 - C5 -4GMW 7.0 PCKGC_RAT
25 PsiBlast_CBE 98.41100% -99 - C5 -2RK8 3.6 PCKGC_RAT
28 PsiBlast_CBE 98.3399% -99 - C5 -3MOH 8.3 PCKGC_RAT
16 PsiBlast_PDB 98.0898% -98 - C5 -4GNO 9.6 PCKGC_RAT
30 PsiBlast_CBE 97.9698% -99 - C5 -4GNM 9.5 PCKGC_RAT
18 PsiBlast_PDB 97.9698%-101 - C5 -4GNQ 9.7 PCKGC_RAT
33 PsiBlast_CBE 97.9198%-100 - C5 -4GMM 9.5 PCKGC_RAT
15 PsiBlast_PDB 97.8899% -98 - C5 -3MOH 7.9 PCKGC_RAT
19 PsiBlast_PDB 97.7298%-101 - C5 -4GMZ 9.2 PCKGC_RAT
17 PsiBlast_PDB 97.7298% -99 - C5 -4GNP 8.6 PCKGC_RAT
20 PsiBlast_PDB 97.3698%-100 - C5 -4GNL 8.7 PCKGC_RAT
36 PsiBlast_CBE 95.6690%-100 - C5 -1NHX 10.4 PCKGC_HUMAN
37 PsiBlast_CBE 95.5890% -99 - C5 -1M51 8.9 PCKGC_HUMAN
39 PsiBlast_CBE 95.3790% -97 - C5 -1KHF 3.9 PCKGC_HUMAN
35 PsiBlast_CBE 95.1190% -98 - C5 -2GMV 11.2 PCKGC_HUMAN
41 Fugue 94.7990% -98 - C5 -1KHB 9.8 PCKGC_HUMAN
34 PsiBlast_CBE 94.2490%-100 - C5 -2GMV 2.8 PCKGC_HUMAN