@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00850_APHA_M: (2014-09-16 )
MRVIFSEDHKLRNAKTELYGGELVPPFEAPFRAEWILAAVKEAGFDDVVAPARHGLETVLKVHDAGYLNFLETAWDRWKAAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNAAETAISPGTWEAALSSMASAIDGADLIAAGHKAAFSLCRPPGHHAGIDMFGGYCFINNAAVAAQRLLDKGAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDPAEAFPHFLGYAEETGKGAGAGTTANYPMGRGTPYSVWGEALTDSLKRIAAFGAEAIVVSLGVDTFEQDPISFFKLTSPDYITMGRTIAASGVPLLVVMEGGYGVPEIGLNVANVLKGVAG

Atome Classification :

(9 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SHH_A_16(3C0Z)
HDAC7_HUMAN
[Raw transfer]




B3N_A_5(3EW8)
HDAC8_HUMAN
[Raw transfer]




TFG_A_7(2VQO)
HDAC4_HUMAN
[Raw transfer]




TFG_A_7(2VQQ)
HDAC4_HUMAN
[Raw transfer]




TSN_A_16(3C10)
HDAC7_HUMAN
[Raw transfer]




HA3_A_6(2VQV)
HDAC4_HUMAN
[Raw transfer]




NU9_A_8(3ZNR)
HDAC7_HUMAN
[Raw transfer]




SHH_A_3(1C3S)
?
[Raw transfer]




NU7_A_8(3ZNS)
HDAC7_HUMAN
[Raw transfer]




TSN_A_5(1C3R)
?
[Raw transfer]




12 PsiBlast_PDB 39.1433% -83 - C4 -2VQO 4.3 HDAC4_HUMAN
13 PsiBlast_PDB 38.5133% -82 - C4 -2VQV 4.9 HDAC4_HUMAN
20 PsiBlast_PDB 37.4932% -76 - C4 -2VQQ 4.3 HDAC4_HUMAN
19 PsiBlast_PDB 35.8032% -80 - C4 -3ZNS 7.2 HDAC7_HUMAN
18 PsiBlast_PDB 35.5832% -80 - C4 -3ZNR 5.8 HDAC7_HUMAN
16 PsiBlast_PDB 34.7132% -78 - C4 -3C0Z 2.5 HDAC7_HUMAN
17 PsiBlast_PDB 34.6832% -78 - C4 -3C10 5.5 HDAC7_HUMAN
5 PsiBlast_PDB 32.6338% -73 - C4 -1C3R 3.9 ?
6 PsiBlast_PDB 30.8638% -68 - C4 -1C3S 4.3 ?