@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00850_HDAC1_: (2014-09-16 )
MAQTQGTRRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDAIPEESGDEDEDDPDKRISICSSDKRIACEEEFSDSEEEGEGGRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEKTKEEKPEAKGVKEEVKLA

Atome Classification :

(15 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_B_15(4A69)
HDAC3_HUMAN
[Raw transfer]



LLX_B_12(3MAX)
HDAC2_HUMAN
[Raw transfer]



LLX_C_16(3MAX)
HDAC2_HUMAN
[Raw transfer]



SHH_B_18(4LXZ)
HDAC2_HUMAN
[Raw transfer]



SHH_C_24(4LXZ)
HDAC2_HUMAN
[Raw transfer]



20Y_C_24(4LY1)
HDAC2_HUMAN
[Raw transfer]



20Y_B_18(4LY1)
HDAC2_HUMAN
[Raw transfer]



20Y_A_10(4LY1)
HDAC2_HUMAN
[Raw transfer]



B3N_A_5(3EW8)
HDAC8_HUMAN
[Raw transfer]



TSN_A_8(3F0R)
HDAC8_HUMAN
[Raw transfer]



B3N_A_6(3MZ3)
HDAC8_HUMAN
[Raw transfer]



AGE_A_8(3F07)
HDAC8_HUMAN
[Raw transfer]



1DI_A_8(3SFH)
HDAC8_HUMAN
[Raw transfer]



0DI_A_2(3SFF)
HDAC8_HUMAN
[Raw transfer]



I0P_C_17(4A69)
HDAC3_HUMAN
[Raw transfer]



I0P_C_17(4A69)
HDAC3_HUMAN
[Raw transfer]



TSN_A_7(3F0R)
HDAC8_HUMAN
[Raw transfer]



CHAIN_C_3(3RQD)
HDAC8_HUMAN
[Raw transfer]
-
PG4_C_23(4LXZ)
HDAC2_HUMAN
[Raw transfer]



PG4_B_15(4LY1)
HDAC2_HUMAN
[Raw transfer]



PG4_B_15(4LXZ)
HDAC2_HUMAN
[Raw transfer]



CHAIN_D_4(3RQD)
HDAC8_HUMAN
[Raw transfer]
-
30 HHSearch 97.5093%-112 - C1 -4LY1 7.6 HDAC2_HUMAN
15 PsiBlast_CBE 97.1093%-112 - C1 -4LXZ 5.4 HDAC2_HUMAN
13 PsiBlast_CBE 97.0193%-112 - C1 -4LY1 7.7 HDAC2_HUMAN
17 PsiBlast_CBE 96.4193%-114 - C1 -3MAX 7.9 HDAC2_HUMAN
12 PsiBlast_CBE 96.3693%-114 - C1 -4LY1 7.7 HDAC2_HUMAN
16 PsiBlast_CBE 96.3093%-114 - C1 -3MAX 7.6 HDAC2_HUMAN
14 PsiBlast_CBE 96.1393%-113 - C1 -4LXZ 5.5 HDAC2_HUMAN
29 HHSearch 90.2264%-114 - C1 -4A69 2.6 HDAC3_HUMAN
31 HHSearch 78.4240%-100 * C1 *3EW8 3.4 HDAC8_HUMAN
10 PsiBlast_PDB 74.1243% -98 - C1 -3F0R 4.5 HDAC8_HUMAN
9 PsiBlast_PDB 73.5443% -97 - C1 -3F07 4.4 HDAC8_HUMAN
6 PsiBlast_PDB 72.9243%-103 - C1 -3RQD 5.2 HDAC8_HUMAN
8 PsiBlast_PDB 72.2143% -99 - C1 -3SFH 6.6 HDAC8_HUMAN
7 PsiBlast_PDB 71.7543%-106 - C1 -3SFF 6.7 HDAC8_HUMAN
5 PsiBlast_PDB 71.6243%-103 - C1 -3MZ3 4.2 HDAC8_HUMAN