@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00850_HDAC4_: (2014-09-16 )
MSSQSHPDGLSGRDQPVELLNPARVNHMPSTVDVATALPLQVAPSAVPMDLRLDHQFSLPVAEPALREQQLQQELLALKQKQQIQRQILIAEFQRQHEQLSRQHEAQLHEHIKQQQEMLAMKHQQELLEHQRKLERHRQEQELEKQHREQKLQQLKNKEKGKESAVASTEVKMKLQEFVLNKKKALAHRNLNHCISSDPRYWYGKTQHSSLDQSSPPQSGVSTSYNHPVLGMYDAKDDFPLRKTASEPNLKLRSRLKQKVAERRSSPLLRRKDGPVVTALKKRPLDVTDSACSSAPGSGPSSPNNSSGSVSAENGIAPAVPSIPAETSLAHRLVAREGSAAPLPLYTSPSLPNITLGLPATGPSAGTAGQQDAERLTLPALQQRLSLFPGTHLTPYLSTSPLERDGGAAHSPLLQHMVLLEQPPAQAPLVTGLGALPLHAQSLVGADRVSPSIHKLRQHRPLGRTQSAPLPQNAQALQHLVIQQQHQQFLEKHKQQFQQQQLQMNKIIPKPSEPARQPESHPEETEEELREHQALLDEPYLDRLPGQKEAHAQAGVQVKQEPIESDEEEAEPPREVEPGQRQPSEQELLFRQQALLLEQQRIHQLRNYQASMEAAGIPVSFGGHRPLSRAQSSPASATFPVSVQEPPTKPRFTTGLVYDTLMLKHQCTCGSSSSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSKKLLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGLAGGRIVLALEGGHDLTAICDASEACVSALLGNELDPLPEKVLQQRPNANAVRSMEKVMEIHSKYWRCLQRTTSTAGRSLIEAQTCENEEAETVTAMASLSVGVKPAEKRPDEEPMEEEPPL

Atome Classification :

(19 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

9F4_C_10(4CBT)

[Raw transfer]



9F4_B_7(4CBT)
HDAC4_HUMAN
[Raw transfer]



TSN_C_18(3C10)

[Raw transfer]



TSN_B_17(3C10)
HDAC7_HUMAN
[Raw transfer]



TFG_A_7(2VQQ)
HDAC4_HUMAN
[Raw transfer]



SHH_C_18(3C0Z)

[Raw transfer]



TFG_A_8(2VQJ)

[Raw transfer]



TSN_A_16(3C10)
HDAC7_HUMAN
[Raw transfer]



NU9_A_8(3ZNR)
HDAC7_HUMAN
[Raw transfer]



NU7_A_8(3ZNS)
HDAC7_HUMAN
[Raw transfer]



TFG_A_7(2VQO)
HDAC4_HUMAN
[Raw transfer]



SHH_B_17(3C0Z)
HDAC7_HUMAN
[Raw transfer]



SHH_A_16(3C0Z)
HDAC7_HUMAN
[Raw transfer]



HA3_A_4(2VQM)

[Raw transfer]



NU7_B_13(3ZNS)
HDAC7_HUMAN
[Raw transfer]



HA3_B_13(2VQV)

[Raw transfer]



B3N_A_5(3EW8)
HDAC8_HUMAN
[Raw transfer]



NU7_C_18(3ZNS)

[Raw transfer]



1DI_A_8(3SFH)
HDAC8_HUMAN
[Raw transfer]



0DI_A_2(3SFF)
HDAC8_HUMAN
[Raw transfer]
1 PsiBlast_PDB 99.23100%-106 - C2 -2VQJ 3.8
2 PsiBlast_PDB 98.42100%-107 - C2 -2VQM 3.3
4 PsiBlast_PDB 97.7399%-103 - C2 -2VQO 4.4 HDAC4_HUMAN
3 PsiBlast_PDB 97.6799%-100 - C2 -2VQQ 4.5 HDAC4_HUMAN
21 PsiBlast_CBE 97.2999%-103 - C2 -2VQQ -
23 PsiBlast_CBE 97.0399%-104 - C2 -2VQO -
22 PsiBlast_CBE 96.1899%-104 - C2 -2VQV 4.0
25 PsiBlast_CBE 93.95100%-103 - C2 -4CBT 7.5 HDAC4_HUMAN
24 PsiBlast_CBE 93.61100%-105 - C2 -4CBT 7.6
9 PsiBlast_PDB 90.9771% -99 - C2 -3C10 5.7 HDAC7_HUMAN
10 PsiBlast_PDB 90.3771%-102 - C2 -3ZNR 8.1 HDAC7_HUMAN
11 PsiBlast_PDB 90.1871%-105 - C2 -3ZNS 8.5 HDAC7_HUMAN
30 PsiBlast_CBE 90.0571%-100 - C2 -3ZNS 7.7 HDAC7_HUMAN
8 PsiBlast_PDB 89.6371% -99 - C2 -3C0Z 3.3 HDAC7_HUMAN
36 PsiBlast_CBE 89.4771%-103 - C2 -3C0Z 3.1 HDAC7_HUMAN
29 PsiBlast_CBE 89.4571%-102 - C2 -3ZNS 8.2
34 PsiBlast_CBE 88.8971%-103 - C2 -3C10 5.5 HDAC7_HUMAN
35 PsiBlast_CBE 88.7171%-101 - C2 -3C0Z 3.0
33 PsiBlast_CBE 88.3771%-102 - C2 -3C10 5.6