@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00850_HDAC7_: (2014-09-16 )
MDLRVGQRPPVEPPPEPTLLALQRPQRLHHHLFLAGLQQQRSVEPMRLSMDTPMPELQVGPQEQELRQLLHKDKSKRSAVASSVVKQKLAEVILKKQQAALERTVHPNSPGIPYRTLEPLETEGATRSMLSSFLPPVPSLPSDPPEHFPLRKTVSEPNLKLRYKPKKSLERRKNPLLRKESAPPSLRRRPAETLGDSSPSSSSTPASGCSSPNDSEHGPNPILGSEALLGQRLRLQETSVAPFALPTVSLLPAITLGLPAPARADSDRRTHPTLGPRGPILGSPHTPLFLPHGLEPEAGGTLPSRLQPILLLDPSGSHAPLLTVPGLGPLPFHFAQSLMTTERLSGSGLHWPLSRTRSEPLPPSATAPPPPGPMQPRLEQLKTHVQVIKRSAKPSEKPRLRQIPSAEDLETDGGGPGQVVDDGLEHRELGHGQPEARGPAPLQQHPQVLLWEQQRLAGRLPRGSTGDTVLLPLAQGGHRPLSRAQSSPAAPASLSAPEPASQARVLSSSETPARTLPFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIRSLEAVIRVHSKYWGCMQRLASCPDSWVPRVPGADKEEVEAVTALASLSVGILAEDRPSEQLVEEEEPMNL

Atome Classification :

(19 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TSN_B_17(3C10)
HDAC7_HUMAN
[Raw transfer]



9F4_B_7(4CBT)
HDAC4_HUMAN
[Raw transfer]



TSN_C_18(3C10)

[Raw transfer]



9F4_C_10(4CBT)

[Raw transfer]



SHH_C_18(3C0Z)

[Raw transfer]



TSN_A_16(3C10)
HDAC7_HUMAN
[Raw transfer]



NU9_A_8(3ZNR)
HDAC7_HUMAN
[Raw transfer]



NU7_A_8(3ZNS)
HDAC7_HUMAN
[Raw transfer]



SHH_A_16(3C0Z)
HDAC7_HUMAN
[Raw transfer]



NU7_B_13(3ZNS)
HDAC7_HUMAN
[Raw transfer]



TFG_A_7(2VQQ)
HDAC4_HUMAN
[Raw transfer]



SHH_B_17(3C0Z)
HDAC7_HUMAN
[Raw transfer]



TFG_A_8(2VQJ)

[Raw transfer]



TFG_A_7(2VQO)
HDAC4_HUMAN
[Raw transfer]



NU7_C_18(3ZNS)

[Raw transfer]



HA3_A_4(2VQM)

[Raw transfer]



B3N_A_5(3EW8)
HDAC8_HUMAN
[Raw transfer]



HA3_B_13(2VQV)

[Raw transfer]
3 PsiBlast_PDB 99.21100%-105 - C4 -3C10 5.6 HDAC7_HUMAN
4 PsiBlast_PDB 98.55100%-105 - C4 -3ZNR 8.1 HDAC7_HUMAN
2 PsiBlast_PDB 98.48100%-105 - C4 -3C0Z 3.3 HDAC7_HUMAN
24 PsiBlast_CBE 98.26100%-106 - C4 -3C0Z 3.1 HDAC7_HUMAN
18 PsiBlast_CBE 98.16100%-106 - C4 -3ZNS 7.7 HDAC7_HUMAN
5 PsiBlast_PDB 97.83100%-109 - C4 -3ZNS 8.5 HDAC7_HUMAN
22 PsiBlast_CBE 97.32100%-106 - C4 -3C10 5.6 HDAC7_HUMAN
17 PsiBlast_CBE 97.26100%-107 - C4 -3ZNS 8.2
21 PsiBlast_CBE 96.28100%-107 - C4 -3C10 5.6
23 PsiBlast_CBE 95.74100%-105 - C4 -3C0Z 3.0
6 PsiBlast_PDB 92.2972%-101 - C4 -2VQJ 3.8
7 PsiBlast_PDB 91.2872%-104 - C4 -2VQM 3.3
9 PsiBlast_PDB 90.3571% -99 - C4 -2VQO 4.4 HDAC4_HUMAN
31 PsiBlast_CBE 90.3071%-100 - C4 -2VQO -
27 PsiBlast_CBE 90.2871% -99 - C4 -2VQQ -
8 PsiBlast_PDB 90.0371% -97 - C4 -2VQQ 4.5 HDAC4_HUMAN
30 PsiBlast_CBE 89.4471%-101 - C4 -2VQV 4.0
29 PsiBlast_CBE 89.3475%-102 - C4 -4CBT 7.5 HDAC4_HUMAN
28 PsiBlast_CBE 87.9875%-102 - C4 -4CBT 7.6