@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF01048_PNPH_B: (2014-09-19 )
MANGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASIPVSGHTG

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

P1D_A_5(2AI2)
PNPH_BOVIN
[Raw transfer]




P1G_A_5(2AI1)
PNPH_BOVIN
[Raw transfer]




9DI_G_7(1A9P)
PNPH_BOVIN
[Raw transfer]




NOS_G_7(1A9S)
PNPH_BOVIN
[Raw transfer]




IMG_A_4(1B8N)
PNPH_BOVIN
[Raw transfer]




IMH_A_4(1B8O)
PNPH_BOVIN
[Raw transfer]




IMH_M_13(1RT9)
PNPH_HUMAN
[Raw transfer]




P2G_A_5(2AI3)
PNPH_BOVIN
[Raw transfer]




IMH_M_13(1RR6)
PNPH_HUMAN
[Raw transfer]




DIH_A_5(3BGS)
PNPH_HUMAN
[Raw transfer]




DIH_M_13(1RSZ)
PNPH_HUMAN
[Raw transfer]




GMP_M_13(1RFG)
PNPH_HUMAN
[Raw transfer]




22A_A_2(3K8Q)
PNPH_HUMAN
[Raw transfer]




3DG_M_13(1V45)
PNPH_HUMAN
[Raw transfer]




IMH_M_13(1PF7)
PNPH_HUMAN
[Raw transfer]




HA1_A_4(1V48)
PNPH_BOVIN
[Raw transfer]




IMH_G_7(1G2O)
PUNA_MYCTU
[Raw transfer]




MSG_E_5(1YRY)
PNPH_HUMAN
[Raw transfer]




DIH_A_8(2P4S)
?
[Raw transfer]




HPA_G_7(1A9R)
PNPH_BOVIN
[Raw transfer]




IMH_E_3(2Q7O)
PNPH_HUMAN
[Raw transfer]




2DI_M_13(1V3Q)
PNPH_HUMAN
[Raw transfer]




9DG_A_5(3FUC)
PNPH_BOVIN
[Raw transfer]




9DG_C_10(3FUC)
PNPH_BOVIN
[Raw transfer]




9DG_B_8(3FUC)
PNPH_BOVIN
[Raw transfer]




HPA_G_7(1A9T)
PNPH_BOVIN
[Raw transfer]




HPA_G_7(1A9Q)
PNPH_BOVIN
[Raw transfer]




GU7_A_5(1FXU)
PNPH_BOVIN
[Raw transfer]




R1P_D_4(1A9T)
PNPH_BOVIN
[Raw transfer]




GUN_P_16(1V2H)
PNPH_HUMAN
[Raw transfer]




HPA_A_4(1VFN)
PNPH_BOVIN
[Raw transfer]




AZG_P_16(1V41)
PNPH_HUMAN
[Raw transfer]




GUN_J_10(1ULB)
PNPH_HUMAN
[Raw transfer]




7DG_A_5(3INY)
PNPH_HUMAN
[Raw transfer]




BTY_A_4(2QPL)
PNPH_BOVIN
[Raw transfer]




ADE_A_4(4NSN)
?
[Raw transfer]




ADE_A_4(4LNA)
?
[Raw transfer]




XAN_A_2(3ODG)
?
[Raw transfer]




9D9_C_9(3FUC)
PNPH_BOVIN
[Raw transfer]




D1V_A_5(3D1V)
PNPH_HUMAN
[Raw transfer]




9D9_A_4(3FUC)
PNPH_BOVIN
[Raw transfer]




9D9_B_7(3FUC)
PNPH_BOVIN
[Raw transfer]




NDS_G_7(1TCV)
?
[Raw transfer]




MPD_A_5(4LNA)
?
[Raw transfer]




10 PsiBlast_PDB 98.1799%-113 - C6 -1A9P 5.6 PNPH_BOVIN
16 PsiBlast_PDB 96.9899%-121 - C6 -1A9T 4.8 PNPH_BOVIN
14 PsiBlast_PDB 96.9099%-122 - C6 -1B8O 6.0 PNPH_BOVIN
4 PsiBlast_PDB 96.8699%-131 - C6 -2AI3 7.0 PNPH_BOVIN
19 PsiBlast_PDB 96.6599%-123 - C6 -1A9Q 3.4 PNPH_BOVIN
12 PsiBlast_PDB 96.3298%-125 - C6 -1FXU 5.8 PNPH_BOVIN
31 PsiBlast_CBE 96.2499%-127 - C6 -3FUC 4.6 PNPH_BOVIN
32 PsiBlast_CBE 96.1899%-127 - C6 -3FUC 4.4 PNPH_BOVIN
2 PsiBlast_PDB 96.1799%-132 - C6 -2AI1 8.2 PNPH_BOVIN
11 PsiBlast_PDB 96.1299%-120 - C6 -1A9S 6.0 PNPH_BOVIN
72 HHSearch 95.70100%-126 - C6 -3FUC 4.4 PNPH_BOVIN
17 PsiBlast_PDB 95.69100%-129 - C6 -2QPL 3.7 PNPH_BOVIN
20 PsiBlast_PDB 95.6899%-124 - C6 -1A9R 3.6 PNPH_BOVIN
3 PsiBlast_PDB 95.6299%-123 - C6 -2AI2 7.6 PNPH_BOVIN
13 PsiBlast_PDB 95.5299%-122 - C6 -1B8N 6.2 PNPH_BOVIN
1 PsiBlast_PDB 95.0599%-135 - C6 -1V48 7.5 PNPH_BOVIN
48 PsiBlast_CBE 94.4488%-122 - C6 -1RSZ 4.9 PNPH_HUMAN
33 PsiBlast_CBE 93.9388%-123 - C6 -3K8Q 4.3 PNPH_HUMAN
47 PsiBlast_CBE 93.8588%-121 - C6 -1RT9 5.7 PNPH_HUMAN
42 PsiBlast_CBE 93.8588%-120 - C6 -3BGS 4.7 PNPH_HUMAN
49 PsiBlast_CBE 93.7488%-122 - C6 -1RR6 5.2 PNPH_HUMAN
18 PsiBlast_PDB 93.6799%-124 - C6 -1VFN 3.3 PNPH_BOVIN
57 PsiBlast_CBE 93.3488%-119 - C6 -1V45 4.2 PNPH_HUMAN
43 PsiBlast_CBE 92.6888%-118 - C6 -2Q7O 4.4 PNPH_HUMAN
50 PsiBlast_CBE 92.4688%-117 - C6 -1PF7 4.5 PNPH_HUMAN
45 PsiBlast_CBE 92.4688%-117 - C6 -1ULB 3.6 PNPH_HUMAN
41 PsiBlast_CBE 92.3488%-116 - C6 -3D1V 2.9 PNPH_HUMAN
59 PsiBlast_CBE 92.0188%-121 - C6 -1V3Q 4.5 PNPH_HUMAN
58 PsiBlast_CBE 91.9588%-116 - C6 -1V41 4.8 PNPH_HUMAN
40 PsiBlast_CBE 91.7488%-118 - C6 -3INY 3.9 PNPH_HUMAN
61 PsiBlast_CBE 91.7288%-120 - C6 -1RFG 4.8 PNPH_HUMAN
60 PsiBlast_CBE 91.7288%-119 - C6 -1V2H 3.5 PNPH_HUMAN
44 PsiBlast_CBE 91.3988%-117 - C6 -1YRY 3.5 PNPH_HUMAN
76 HHSearch 82.8255%-115 - C6 -2P4S 5.3 ?
75 HHSearch 78.3348%-115 - C6 -1TCV 2.8 ?
78 HHSearch 77.1947%-112 - C6 -4NSN 3.4 ?
82 HHSearch 76.7246%-121 - C6 -4LNA 4.0 ?
79 HHSearch 74.7241%-110 - C6 -3ODG 4.1 ?
77 HHSearch 69.2838%-115 - C6 -1G2O 5.7 PUNA_MYCTU