@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF01373_AMYB_H: (2014-09-23 )
MEVNVKGNYVQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWSAYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTRNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKDFLDAGVIVDIEVGLGPAGEMRYPSYPQSHGWSFPGIGEFICYDKYLQADFKAAAAAVGHPEWEFPNDVGQYNDTPERTQFFRDNGTYLSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKISGIHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDLEQSSQAMSAPEELVQQVLSAGWREGLNVACENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGFTYLRLSNQLVEGQNYVNFKTFVDRMHANLPRDPYVDPMAPLPRSGPEISIEMILQAAQPKLQPFPFQEHTDLPVGPTGGMGGQAEGPTCGMGGQVKGPTGGMGGQAEDPTSGIGGELPATM

Atome Classification :

(18 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MAL_A_2(1WDR)
AMYB_SOYBN
[Raw transfer]




SUGAR_B_2(1B1Y)
AMYB_HORVU
[Raw transfer]

-

SUGAR_B_2(1V3I)
AMYB_SOYBN
[Raw transfer]

-

DOM_B_2(1BYD)
AMYB_SOYBN
[Raw transfer]




SUGAR_B_2(1Q6C)
AMYB_SOYBN
[Raw transfer]

-

SUGAR_B_2(1BYC)
AMYB_SOYBN
[Raw transfer]

-

SUGAR_A_2(1VEM)
AMYB_BACCE
[Raw transfer]

-

SUGAR_B_2(1BYB)
AMYB_SOYBN
[Raw transfer]

-

SUGAR_A_2(1V3H)
AMYB_SOYBN
[Raw transfer]

-

EPG_A_2(2XGB)
AMYB_HORVU
[Raw transfer]




EBG_A_4(2XGI)
AMYB_HORVU
[Raw transfer]




GLC_A_3(2XG9)
AMYB_HORVU
[Raw transfer]




QPS_A_2(2XFF)
AMYB_HORVU
[Raw transfer]




SUGAR_A_2(1WDS)
AMYB_SOYBN
[Raw transfer]

-

MAL_A_3(1WDR)
AMYB_SOYBN
[Raw transfer]




NOJ_A_2(2XG9)
AMYB_HORVU
[Raw transfer]




DOM_C_3(1BYD)
AMYB_SOYBN
[Raw transfer]




GOL_A_9(3VOC)
AMYB_PAEPO
[Raw transfer]




EDO_A_3(2XGB)
AMYB_HORVU
[Raw transfer]




GLC_C_3(1BYB)
AMYB_SOYBN
[Raw transfer]




DTT_I_9(1FA2)
AMYB_IPOBA
[Raw transfer]




ACX_A_2(2XFY)
AMYB_HORVU
[Raw transfer]




DOM_E_5(1FA2)
AMYB_IPOBA
[Raw transfer]




GLC_C_3(1B1Y)
AMYB_HORVU
[Raw transfer]




GLC_A_3(1WDS)
AMYB_SOYBN
[Raw transfer]




SUGAR_B_2(1BFN)
AMYB_SOYBN
[Raw transfer]

-

GLC_C_3(1BYC)
AMYB_SOYBN
[Raw transfer]




7 PsiBlast_PDB 97.3997%-101 - C1 -1B1Y 3.9 AMYB_HORVU
1 PsiBlast_PDB 97.1599%-101 - C1 -2XFF 4.8 AMYB_HORVU
3 PsiBlast_PDB 97.0499%-101 - C1 -2XFY 3.6 AMYB_HORVU
6 PsiBlast_PDB 96.7799% -99 - C1 -2XGI 3.0 AMYB_HORVU
4 PsiBlast_PDB 96.6099%-100 - C1 -2XG9 3.0 AMYB_HORVU
5 PsiBlast_PDB 96.4599% -99 - C1 -2XGB 3.6 AMYB_HORVU
10 PsiBlast_PDB 88.3366% -99 - C1 -1BFN 5.0 AMYB_SOYBN
11 PsiBlast_PDB 88.1266% -97 - C1 -1WDR 4.7 AMYB_SOYBN
16 PsiBlast_PDB 88.1166% -97 - C1 -1WDS 3.7 AMYB_SOYBN
13 PsiBlast_PDB 87.6266% -97 - C1 -1V3H 8.7 AMYB_SOYBN
14 PsiBlast_PDB 87.3466% -98 - C1 -1V3I 4.5 AMYB_SOYBN
18 PsiBlast_PDB 87.2566% -97 - C1 -1BYB 4.3 AMYB_SOYBN
20 PsiBlast_PDB 87.2266% -96 - C1 -1BYD 4.9 AMYB_SOYBN
8 PsiBlast_PDB 87.2266% -97 - C1 -1Q6C 4.4 AMYB_SOYBN
19 PsiBlast_PDB 86.7566% -97 - C1 -1BYC 6.4 AMYB_SOYBN
33 HHSearch 83.6860% -96 - C1 -1FA2 3.3 AMYB_IPOBA
34 HHSearch 64.8735% -96 - C1 -3VOC 2.0 AMYB_PAEPO
35 HHSearch 60.6531% -87 - C1 -1VEM 4.3 AMYB_BACCE