@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF01433_ERAP2_HUMAN: (2014-09-23 )
MFHSSAMVNSHRKPMFNIHRGFYCLTAILPQICICSQFSVPSSYHFTEDPGAFPVATNGERFPWQELRLPSVVIPLHYDLFVHPNLTSLDFVASEKIEVLVSNATQFIILHSKDLEITNATLQSEEDSRYMKPGKELKVLSYPAHEQIALLVPEKLTPHLKYYVAMDFQAKLGDGFEGFYKSTYRTLGGETRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIELEGGLLEDHFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLKEGFAKYMELIAVNATYPELQFDDYFLNVCFEVITKDSLNSSRPISKPAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSYRNAKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWTLQKGIPLLVVKQDGCSLRLQQERFLQGVFQEDPEWRALQERYLWHIPLTYSTSSSNVIHRHILKSKTDTLDLPEKTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQLVGAGRLTLDKALDMTYYLQHETSSPALLEGLSYLESFYHMMDRRNISDISENLKRYLLQYFKPVIDRQSWSDKGSVWDRMLRSALLKLACDLNHAPCIQKAAELFSQWMESSGKLNIPTDVLKIVYSVGAQTTAGWNYLLEQYELSMSSAEQNKILYALSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTTAHFSSKDKLQEVKLFFESLEAQGSHLDIFQTVLETITKNIKWLEKNLPTLRTWLMVNT

Atome Classification :

(10 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BES_A_10(4KXB)
AMPE_HUMAN
[Raw transfer]



BES_A_13(4FKK)
AMPN_PIG
[Raw transfer]



ARG_A_11(4KX9)
AMPE_HUMAN
[Raw transfer]



PHE_A_5(3B34)
AMPN_ECOLI
[Raw transfer]



ASP_A_12(4KXA)
AMPE_HUMAN
[Raw transfer]



GLU_A_11(4KXC)
AMPE_HUMAN
[Raw transfer]



GLU_A_12(4KXD)
AMPE_HUMAN
[Raw transfer]



GOL_A_10(3B34)
AMPN_ECOLI
[Raw transfer]



ALA_A_13(4FKH)
AMPN_PIG
[Raw transfer]



CHAIN_B_2(4NZ8)
AMPN_PIG
[Raw transfer]
-
ACY_A_22(4FYQ)
AMPN_HUMAN
[Raw transfer]



CHAIN_C_2(4KX8)
AMPE_HUMAN
[Raw transfer]
-
7 PsiBlast_PDB 79.2234% -86 - C2 -4KX8 4.8 AMPE_HUMAN
17 PsiBlast_PDB 79.0033% -86 - C2 -4FKK 5.3 AMPN_PIG
16 PsiBlast_PDB 78.9833% -88 - C2 -4FKH 3.8 AMPN_PIG
8 PsiBlast_PDB 78.9534% -87 - C2 -4KX9 3.3 AMPE_HUMAN
13 PsiBlast_PDB 78.8633% -88 - C2 -4NZ8 3.9 AMPN_PIG
12 PsiBlast_PDB 78.6534% -85 - C2 -4KXD 3.7 AMPE_HUMAN
11 PsiBlast_PDB 78.5634% -87 - C2 -4KXC 3.9 AMPE_HUMAN
10 PsiBlast_PDB 78.4934% -87 - C2 -4KXB 5.5 AMPE_HUMAN
9 PsiBlast_PDB 78.3934% -87 - C2 -4KXA 3.7 AMPE_HUMAN
20 PsiBlast_PDB 77.2333% -81 - C2 -4FYQ 3.8 AMPN_HUMAN