@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF01467_COAD_E: (2014-09-24 )
MQKRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASPSKKPMFTLEERVALAQQATAHLGNVEVVGFSDLMANFARNQHATVLIRGLRAVADFEYEMQLAHMNRHLMPELESVFLMPSKEWSFISSSLVKEVARHQGDVTHFLPENVHQALMAKLA

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

COD_A_2(3PXU)
COAD_BURP1
[Raw transfer]




COD_J_10(1B6T)
COAD_ECOLI
[Raw transfer]




COA_A_8(3OTW)
COAD_HELPY
[Raw transfer]




COA_A_2(3L92)
COAD_YERPE
[Raw transfer]




COD_A_2(3RBA)
COAD_MYCTU
[Raw transfer]




ATP_A_2(3UC5)
COAD_MYCTU
[Raw transfer]




ATP_A_4(1GN8)
COAD_ECOLI
[Raw transfer]




ATP_B_6(1GN8)
COAD_ECOLI
[Raw transfer]




4PS_A_2(3K9W)
COAD_BURP1
[Raw transfer]




COA_A_7(1H1T)
COAD_ECOLI
[Raw transfer]




APC_A_5(3NBA)
COAD_MYCTU
[Raw transfer]




ADP_A_5(1O6B)
COAD_BACSU
[Raw transfer]




PNS_B_22(1QJC)
COAD_ECOLI
[Raw transfer]




PNS_B_8(1H1T)
COAD_ECOLI
[Raw transfer]




PPS_A_2(3F3M)
COAD_STAAW
[Raw transfer]




PPS_A_2(3F3M)
COAD_STAAW
[Raw transfer]




PNS_A_7(1VLH)
COAD_THEMA
[Raw transfer]




COA_A_5(3PNB)
COAD_MYCTU
[Raw transfer]




FMT_A_2(3L93)
COAD_YERPE
[Raw transfer]




PNS_A_2(1OD6)
COAD_THET8
[Raw transfer]




COA_A_2(3RHS)
COAD_MYCTU
[Raw transfer]




PNS_A_5(3NBK)
COAD_MYCTU
[Raw transfer]




ADE_A_3(3K9W)
COAD_BURP1
[Raw transfer]




ACY_A_6(3NV7)
COAD_HELPY
[Raw transfer]




21 PsiBlast_CBE 95.83100%-143 - C1 -1H1T 3.8 COAD_ECOLI
22 PsiBlast_CBE 95.50100%-142 - C1 -1GN8 7.5 COAD_ECOLI
3 PsiBlast_PDB 95.41100%-140 - C1 -1H1T 5.4 COAD_ECOLI
24 PsiBlast_CBE 95.12100%-141 - C1 -1QJC 4.3 COAD_ECOLI
23 PsiBlast_CBE 93.42100%-141 - C1 -1B6T 9.4 COAD_ECOLI
2 PsiBlast_PDB 91.21100%-136 - C1 -1GN8 6.3 COAD_ECOLI
5 PsiBlast_PDB 84.9773%-140 - C1 -3L92 6.7 COAD_YERPE
6 PsiBlast_PDB 84.2473%-136 - C1 -3L93 2.9 COAD_YERPE
7 PsiBlast_PDB 78.1948%-149 - C1 -3PXU 8.8 COAD_BURP1
8 PsiBlast_PDB 76.3148%-142 - C1 -3K9W 4.1 COAD_BURP1
40 HHSearch 74.0848%-143 - C1 -1OD6 3.2 COAD_THET8
9 PsiBlast_PDB 73.2149%-138 - C1 -1VLH 4.9 COAD_THEMA
12 PsiBlast_PDB 72.7542%-135 - C1 -1O6B 7.2 COAD_BACSU
44 HHSearch 71.1144%-129 - C1 -3NBK 3.0 COAD_MYCTU
10 PsiBlast_PDB 70.6949%-134 - C1 -3OTW 9.1 COAD_HELPY
42 HHSearch 70.6246%-127 - C1 -3F3M 5.8 COAD_STAAW
19 PsiBlast_PDB 69.6043%-129 - C1 -3RHS 3.3 COAD_MYCTU
17 PsiBlast_PDB 69.1843%-128 - C1 -3RBA 7.9 COAD_MYCTU
20 PsiBlast_PDB 68.9643%-123 - C1 -3UC5 7.2 COAD_MYCTU
13 PsiBlast_PDB 68.7943%-125 - C1 -3NBA 6.8 COAD_MYCTU
15 PsiBlast_PDB 68.6443%-127 - C1 -3PNB 5.4 COAD_MYCTU
43 HHSearch 55.3147%-151 - C1 -3NV7 3.5 COAD_HELPY