@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF01467_NADD_B: (2014-09-24 )
MRKIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQGRNITSVESRLQMLELATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGYKLRTPYPITTVEIPEFAVSSSLLRERYKEKKTCKYLLPEKVQVYIERNGLYES

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FMT_A_4(3MLB)
NADD_BACAC
[Raw transfer]



NXX_C_10(2QTR)
NADD_BACAC
[Raw transfer]



NXX_A_8(2QTR)
NADD_BACAC
[Raw transfer]



DND_C_9(3E27)
?
[Raw transfer]



NXX_B_9(2QTR)
NADD_BACAC
[Raw transfer]



DND_B_7(3E27)
?
[Raw transfer]



DND_A_5(3E27)
?
[Raw transfer]



DND_D_11(3E27)
?
[Raw transfer]



DND_D_4(2H29)
NADD_STAAC
[Raw transfer]



NAD_D_4(1K4M)
NADD_ECOLI
[Raw transfer]



GOL_B_8(2QTM)
?
[Raw transfer]



FMT_A_4(3MLB)
NADD_BACAC
[Raw transfer]



GOL_A_6(2QTM)
?
[Raw transfer]



NCN_B_5(2QTN)
?
[Raw transfer]



JJZ_A_3(3MLA)
NADD_BACAC
[Raw transfer]



LJZ_A_5(3MLB)
NADD_BACAC
[Raw transfer]



LJZ_A_5(3MLB)
NADD_BACAC
[Raw transfer]



NCN_A_6(1YUM)
NADD_PSEAE
[Raw transfer]



DZ9_A_3(3HFJ)
?
[Raw transfer]



JJZ_A_3(3MLA)
NADD_BACAC
[Raw transfer]



CIT_A_5(1YUM)
NADD_PSEAE
[Raw transfer]



DZ9_A_3(3HFJ)
?
[Raw transfer]



CIT_E_5(1K4M)
NADD_ECOLI
[Raw transfer]
21 PsiBlast_CBE 97.57100%-163 - C1 -3HFJ 5.3 ?
6 PsiBlast_PDB 96.4899%-165 - C1 -2QTM 2.7 ?
2 PsiBlast_PDB 95.39100%-157 - C1 -3HFJ 5.1 ?
4 PsiBlast_PDB 95.11100%-163 - C1 -3MLB 6.5 NADD_BACAC
20 PsiBlast_CBE 94.95100%-164 - C1 -3MLA 5.5 NADD_BACAC
3 PsiBlast_PDB 94.72100%-161 - C1 -3MLA 5.8 NADD_BACAC
19 PsiBlast_CBE 94.57100%-163 - C1 -3MLB 6.5 NADD_BACAC
29 PsiBlast_CBE 94.3999%-152 - C1 -2QTM 2.6 ?
7 PsiBlast_PDB 94.0899%-151 - C1 -2QTN - ?
24 PsiBlast_CBE 93.95100%-153 - C1 -2QTR 11.7 NADD_BACAC
28 PsiBlast_CBE 93.9499%-149 - C1 -2QTN 4.8 ?
22 PsiBlast_CBE 93.26100%-148 - C1 -2QTR 12.5 NADD_BACAC
26 PsiBlast_CBE 93.1899%-148 - C1 -3E27 11.7 ?
23 PsiBlast_CBE 93.03100%-149 - C1 -2QTR 11.5 NADD_BACAC
27 PsiBlast_CBE 92.5999%-152 - C1 -3E27 12.0 ?
25 PsiBlast_CBE 92.5099%-147 - C1 -3E27 11.8 ?
8 PsiBlast_PDB 91.5199%-144 - C1 -3E27 12.0 ?
43 HHSearch 68.0537%-131 - C1 -2H29 10.5 NADD_STAAC
41 HHSearch 66.6939%-127 - C1 -1K4M 9.7 NADD_ECOLI
44 HHSearch 62.9237%-131 - C1 -1YUM 3.6 NADD_PSEAE