@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF01471_MMP13_: (2014-09-24 )
MHPGVLAAFLFLSWTHCRALPLPSGGDEDDLSEEDLQFAERYLRSYYHPTNLAGILKENAASSMTERLREMQSFFGLEVTGKLDDNTLDVMKKPRCGVPDVGEYNVFPRTLKWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYGPGDEDPNPKHPKTPDKCDPSLSLDAITSLRGETMIFKDRFFWRLHPQQVDAELFLTKSFWPELPNRIDAAYEHPSHDLIFIFRGRKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGNQVWRYDDTNHIMDKDYPRLIEEDFPGIGDKVDAVYEKNGYIYFFNGPIQFEYSIWSNRIVRVMPANSILWC

Atome Classification :

(57 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EDO_D_(4FU4)
MMP13_HUMAN
[Raw transfer]



EDO_D_(4FU4)
MMP13_HUMAN
[Raw transfer]



PB5_A_11(1XUR)
MMP13_HUMAN
[Raw transfer]



3EJ_B_14(3KEJ)
MMP13_HUMAN
[Raw transfer]



3EJ_A_8(3KEJ)
MMP13_HUMAN
[Raw transfer]



3EK_B_14(3KEK)
MMP13_HUMAN
[Raw transfer]



PB5_B_12(1XUR)
MMP13_HUMAN
[Raw transfer]



PB3_A_11(1XUC)
MMP13_HUMAN
[Raw transfer]



PB3_B_12(1XUC)
MMP13_HUMAN
[Raw transfer]



3EK_A_8(3KEK)
MMP13_HUMAN
[Raw transfer]



3KE_A_10(3KEC)
MMP13_HUMAN
[Raw transfer]



GOL_A_14(4FVL)
?
[Raw transfer]



PB4_A_11(1XUD)
MMP13_HUMAN
[Raw transfer]



PB4_B_12(1XUD)
MMP13_HUMAN
[Raw transfer]



3KE_B_17(3KEC)
MMP13_HUMAN
[Raw transfer]



SP6_B_16(2OW9)
MMP13_HUMAN
[Raw transfer]



3O2_C_23(3O2X)
MMP13_HUMAN
[Raw transfer]



SP6_A_15(2OW9)
MMP13_HUMAN
[Raw transfer]



GOL_A_5(4A7B)
MMP13_HUMAN
[Raw transfer]



3O2_B_14(3O2X)
MMP13_HUMAN
[Raw transfer]



033_A_25(1ZTQ)
MMP13_HUMAN
[Raw transfer]



3O2_A_5(3O2X)
MMP13_HUMAN
[Raw transfer]



GOL_B_17(3ZXH)
MMP13_HUMAN
[Raw transfer]



518_A_8(3I7I)
MMP13_HUMAN
[Raw transfer]



FMT_A_8(3I7G)
MMP13_HUMAN
[Raw transfer]



FA4_B_16(2D1N)
MMP13_HUMAN
[Raw transfer]



347_C_25(2PJT)
MMP13_HUMAN
[Raw transfer]



033_D_(1ZTQ)
MMP13_HUMAN
[Raw transfer]



E3P_A_7(3TVC)
MMP13_HUMAN
[Raw transfer]



5EL_A_3(2YIG)
MMP13_HUMAN
[Raw transfer]



3W4_B_11(4A7B)
MMP13_HUMAN
[Raw transfer]



FA4_A_15(2D1N)
MMP13_HUMAN
[Raw transfer]



3W5_A_3(4A7B)
MMP13_HUMAN
[Raw transfer]



347_B_24(2PJT)
MMP13_HUMAN
[Raw transfer]



347_D_26(2PJT)
MMP13_HUMAN
[Raw transfer]



5EL_B_9(2YIG)
MMP13_HUMAN
[Raw transfer]



347_A_23(2PJT)
MMP13_HUMAN
[Raw transfer]



RS1_B_10(830C)
?
[Raw transfer]



GOL_B_13(4A7B)
MMP13_HUMAN
[Raw transfer]



0XX_A_9(4H1Q)
MMP9_HUMAN
[Raw transfer]



CBP_B_12(1CXV)
MMP13_MOUSE
[Raw transfer]



3KR_A_9(3KRY)
MMP13_HUMAN
[Raw transfer]



LA3_A_11(3LJZ)
MMP13_HUMAN
[Raw transfer]



CBP_B_10(456C)
MMP13_HUMAN
[Raw transfer]



3KR_D_24(3KRY)
MMP13_HUMAN
[Raw transfer]



LA3_B_19(3LJZ)
MMP13_HUMAN
[Raw transfer]



3KR_B_14(3KRY)
MMP13_HUMAN
[Raw transfer]



E41_B_16(3ZXH)
MMP13_HUMAN
[Raw transfer]



3KR_C_19(3KRY)
MMP13_HUMAN
[Raw transfer]



BSI_A_6(1I76)
MMP8_HUMAN
[Raw transfer]



24F_A_9(3ELM)
MMP13_HUMAN
[Raw transfer]



24F_B_15(3ELM)
MMP13_HUMAN
[Raw transfer]



HTA_A_8(1FBL)
MMP1_PIG
[Raw transfer]



732_A_9(3I7G)
MMP13_HUMAN
[Raw transfer]



BAT_A_6(1RM8)
MMP16_HUMAN
[Raw transfer]



PGO_A_18(4FVL)
?
[Raw transfer]



HAE_B_18(2OW9)
MMP13_HUMAN
[Raw transfer]



PGO_A_17(4FVL)
?
[Raw transfer]



HAE_A_17(2OW9)
MMP13_HUMAN
[Raw transfer]



HAE_A_4(4A7B)
MMP13_HUMAN
[Raw transfer]



HAE_B_12(4A7B)
MMP13_HUMAN
[Raw transfer]



HAE_B_18(3KEC)
MMP13_HUMAN
[Raw transfer]



EPE_B_22(3O2X)
MMP13_HUMAN
[Raw transfer]



EPE_A_13(3O2X)
MMP13_HUMAN
[Raw transfer]



HAE_A_11(3KEC)
MMP13_HUMAN
[Raw transfer]



PEG_A_10(3TVC)
MMP13_HUMAN
[Raw transfer]



EPE_B_16(3LJZ)
MMP13_HUMAN
[Raw transfer]



EPE_C_24(3LJZ)
MMP13_HUMAN
[Raw transfer]



CHAIN_W_5(4G0D)
MMP13_HUMAN
[Raw transfer]
-
CHAIN_D_4(4FVL)
?
[Raw transfer]
-
CHAIN_C_3(4FVL)
?
[Raw transfer]
-
CHAIN_B_2(4IN9)
?
[Raw transfer]
-
CHAIN_B_2(3AYU)
MMP2_HUMAN
[Raw transfer]
-
24 PsiBlast_CBE 92.8299%-115 - C3 -4FVL 10.0 ?
3 PsiBlast_PDB 92.4799%-117 - C3 -4G0D 12.8 MMP13_HUMAN
87 HHSearch 92.32100%-116 - C3 -4FVL 12.7 ?
22 PsiBlast_CBE 92.3099%-116 - C3 -4G0D - ?
21 PsiBlast_CBE 91.4599%-115 - C3 -4G0D - ?
25 PsiBlast_CBE 91.3799%-114 - C3 -4FU4 Error MMP13_HUMAN
6 PsiBlast_PDB 75.4051%-105 - C3 -1FBL 6.0 MMP1_PIG
17 PsiBlast_PDB 53.04100%-104 - C3 -3TVC 9.4 MMP13_HUMAN
51 PsiBlast_CBE 52.61100%-105 - C3 -3KEC 10.7 MMP13_HUMAN
15 PsiBlast_PDB 52.43100%-102 - C3 -2YIG 9.7 MMP13_HUMAN
34 PsiBlast_CBE 52.40100%-102 - C3 -830C 7.5 ?
30 PsiBlast_CBE 52.31100%-102 - C3 -1XUR 9.0 MMP13_HUMAN
45 PsiBlast_CBE 52.2898%-103 - C3 -2OW9 9.7 MMP13_HUMAN
32 PsiBlast_CBE 52.27100%-101 - C3 -1XUC 10.5 MMP13_HUMAN
47 PsiBlast_CBE 52.24100%-105 - C3 -3KEK 11.6 MMP13_HUMAN
9 PsiBlast_PDB 52.19100% -99 - C3 -1XUC 10.3 MMP13_HUMAN
52 PsiBlast_CBE 52.16100%-103 - C3 -2D1N 7.7 MMP13_HUMAN
16 PsiBlast_PDB 52.10100% -98 - C3 -4A7B 8.8 MMP13_HUMAN
20 PsiBlast_PDB 52.0998%-104 - C3 -2OW9 10.1 MMP13_HUMAN
46 PsiBlast_CBE 51.97100%-108 - C3 -3KEK 11.0 MMP13_HUMAN
50 PsiBlast_CBE 51.94100%-101 - C3 -3KEC 11.2 MMP13_HUMAN
53 PsiBlast_CBE 51.90100%-102 - C3 -2D1N 8.1 MMP13_HUMAN
11 PsiBlast_PDB 51.89100% -99 - C3 -1XUR 9.0 MMP13_HUMAN
10 PsiBlast_PDB 51.85100% -98 - C3 -1XUD 10.6 MMP13_HUMAN
13 PsiBlast_PDB 51.74100%-100 - C3 -3I7G 7.3 MMP13_HUMAN
31 PsiBlast_CBE 51.66100% -97 - C3 -1XUD 10.8 MMP13_HUMAN
12 PsiBlast_PDB 51.58100% -98 - C3 -3ELM 9.1 MMP13_HUMAN
49 PsiBlast_CBE 51.49100%-104 - C3 -3KEJ 11.7 MMP13_HUMAN
26 PsiBlast_CBE 51.47100% -97 - C3 -3ZXH 6.5 MMP13_HUMAN
69 PsiBlast_CBE 51.43100%-105 - C3 -3O2X 10.3 MMP13_HUMAN
29 PsiBlast_CBE 51.36100% -96 - C3 -2YIG 9.8 MMP13_HUMAN
72 PsiBlast_CBE 51.35100%-105 - C3 -3LJZ 10.7 MMP13_HUMAN
28 PsiBlast_CBE 51.26100% -95 - C3 -3ELM 8.7 MMP13_HUMAN
48 PsiBlast_CBE 51.25100%-107 - C3 -3KEJ 11.1 MMP13_HUMAN
54 PsiBlast_CBE 51.22100% -99 - C3 -2PJT 6.7 MMP13_HUMAN
71 PsiBlast_CBE 51.18100%-100 - C3 -3LJZ 2.9 MMP13_HUMAN
61 PsiBlast_CBE 51.16100%-100 - C3 -1ZTQ 8.3 MMP13_HUMAN
55 PsiBlast_CBE 51.16100% -98 - C3 -2PJT 6.8 MMP13_HUMAN
14 PsiBlast_PDB 51.15100% -98 - C3 -3I7I 8.3 MMP13_HUMAN
65 PsiBlast_CBE 51.12100%-100 - C3 -3KRY 7.8 MMP13_HUMAN
59 PsiBlast_CBE 51.12100%-107 - C3 -1ZTQ 8.9 MMP13_HUMAN
67 PsiBlast_CBE 51.03100%-103 - C3 -3O2X 9.8 MMP13_HUMAN
33 PsiBlast_CBE 50.99100% -96 - C3 -4A7B 9.1 MMP13_HUMAN
64 PsiBlast_CBE 50.96100%-102 - C3 -3KRY 7.8 MMP13_HUMAN
56 PsiBlast_CBE 50.96100% -98 - C3 -2PJT 7.0 MMP13_HUMAN
63 PsiBlast_CBE 50.71100% -97 - C3 -3KRY 7.8 MMP13_HUMAN
68 PsiBlast_CBE 50.69100% -98 - C3 -3O2X 9.4 MMP13_HUMAN
73 PsiBlast_CBE 50.68100%-100 - C3 -3LJZ 10.5 MMP13_HUMAN
57 PsiBlast_CBE 50.66100% -99 - C3 -2PJT 6.9 MMP13_HUMAN
62 PsiBlast_CBE 50.22100% -95 - C3 -3KRY 8.1 MMP13_HUMAN
74 PsiBlast_CBE 50.2193%-103 - C3 -1CXV 6.8 MMP13_MOUSE
35 PsiBlast_CBE 49.13100% -96 - C3 -456C 7.3 MMP13_HUMAN
105 HHSearch 45.4665% -95 - C3 -3AYU 8.9 MMP2_HUMAN
104 HHSearch 43.8859% -96 * C3 *4H1Q 10.7 MMP9_HUMAN
101 HHSearch 42.7560% -85 - C3 -1I76 7.5 MMP8_HUMAN
103 HHSearch 41.9153% -87 - C3 -1RM8 5.1 MMP16_HUMAN
110 HHSearch 38.4446% -82 - C3 -4IN9 6.5 ?