@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF01471_MMP13_: (2014-09-24 )
ATFFLLSWTHCWSLPLPYGDDDDDDLSEEDLEFAEHYLKSYYHPVTLAGILKKSTVTSTVDRLREMQSFFGLDVTGKLDDPTLDIMRKPRCGVPDVGVYNVFPRTLKWSQTNLTYRIVNYTPDISHSEVEKAFRKAFKVWSDVTPLNFTRIHDGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNLGGDAHFDDDETWTSSSKGYNLFIVAAHELGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYGPGDEDPNPKHPKTPEKCDPALSLDAITSLRGETMIFKDRFFWRLHPQQVEPELFLTKSFWPELPNHVDAAYEHPSRDLMFIFRGRKFWALNGYDIMEGYPRKISDLGFPKEVKRLSAAVHFEDTGKTLFFSGNHVWSYDDANQTMDKDYPRLIEEEFPGIGDKVDAVYEKNGYIYFFNGPIQFEYSIWSNRIVRVMPTNSLLWC

Atome Classification :

(56 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EDO_D_(4FU4)
MMP13_HUMAN
[Raw transfer]



EDO_D_(4FU4)
MMP13_HUMAN
[Raw transfer]



3EJ_A_8(3KEJ)
MMP13_HUMAN
[Raw transfer]



PB5_A_11(1XUR)
MMP13_HUMAN
[Raw transfer]



3EJ_B_14(3KEJ)
MMP13_HUMAN
[Raw transfer]



3EK_A_8(3KEK)
MMP13_HUMAN
[Raw transfer]



3EK_B_14(3KEK)
MMP13_HUMAN
[Raw transfer]



PB5_B_12(1XUR)
MMP13_HUMAN
[Raw transfer]



PB3_A_11(1XUC)
MMP13_HUMAN
[Raw transfer]



PB3_B_12(1XUC)
MMP13_HUMAN
[Raw transfer]



3KE_A_10(3KEC)
MMP13_HUMAN
[Raw transfer]



3KE_B_17(3KEC)
MMP13_HUMAN
[Raw transfer]



3O2_C_23(3O2X)
MMP13_HUMAN
[Raw transfer]



PB4_B_12(1XUD)
MMP13_HUMAN
[Raw transfer]



SP6_B_16(2OW9)
MMP13_HUMAN
[Raw transfer]



PB4_A_11(1XUD)
MMP13_HUMAN
[Raw transfer]



SP6_A_15(2OW9)
MMP13_HUMAN
[Raw transfer]



GOL_A_5(4A7B)
MMP13_HUMAN
[Raw transfer]



3O2_A_5(3O2X)
MMP13_HUMAN
[Raw transfer]



518_A_8(3I7I)
MMP13_HUMAN
[Raw transfer]



3O2_B_14(3O2X)
MMP13_HUMAN
[Raw transfer]



GOL_B_17(3ZXH)
MMP13_HUMAN
[Raw transfer]



033_A_25(1ZTQ)
MMP13_HUMAN
[Raw transfer]



347_C_25(2PJT)
MMP13_HUMAN
[Raw transfer]



5EL_A_3(2YIG)
MMP13_HUMAN
[Raw transfer]



3W5_A_3(4A7B)
MMP13_HUMAN
[Raw transfer]



033_D_(1ZTQ)
MMP13_HUMAN
[Raw transfer]



033_D_(1ZTQ)
MMP13_HUMAN
[Raw transfer]



CBP_A_11(1CXV)
MMP13_MOUSE
[Raw transfer]



CBP_B_12(1CXV)
MMP13_MOUSE
[Raw transfer]



3W4_B_11(4A7B)
MMP13_HUMAN
[Raw transfer]



347_D_26(2PJT)
MMP13_HUMAN
[Raw transfer]



FMT_A_8(3I7G)
MMP13_HUMAN
[Raw transfer]



5EL_B_9(2YIG)
MMP13_HUMAN
[Raw transfer]



E3P_A_7(3TVC)
MMP13_HUMAN
[Raw transfer]



FA4_B_16(2D1N)
MMP13_HUMAN
[Raw transfer]



FA4_A_15(2D1N)
MMP13_HUMAN
[Raw transfer]



3KR_A_9(3KRY)
MMP13_HUMAN
[Raw transfer]



347_B_24(2PJT)
MMP13_HUMAN
[Raw transfer]



3KR_D_24(3KRY)
MMP13_HUMAN
[Raw transfer]



RS1_B_10(830C)
?
[Raw transfer]



3KR_B_14(3KRY)
MMP13_HUMAN
[Raw transfer]



GOL_B_13(4A7B)
MMP13_HUMAN
[Raw transfer]



3KR_C_19(3KRY)
MMP13_HUMAN
[Raw transfer]



347_A_23(2PJT)
MMP13_HUMAN
[Raw transfer]



0XX_A_9(4H1Q)
MMP9_HUMAN
[Raw transfer]



CBP_B_10(456C)
MMP13_HUMAN
[Raw transfer]



E41_B_16(3ZXH)
MMP13_HUMAN
[Raw transfer]



24F_A_9(3ELM)
MMP13_HUMAN
[Raw transfer]



LA3_B_19(3LJZ)
MMP13_HUMAN
[Raw transfer]



BSI_A_6(1I76)
MMP8_HUMAN
[Raw transfer]



24F_B_15(3ELM)
MMP13_HUMAN
[Raw transfer]



732_A_9(3I7G)
MMP13_HUMAN
[Raw transfer]



BAT_A_6(1RM8)
MMP16_HUMAN
[Raw transfer]



PGO_A_18(4FVL)
?
[Raw transfer]



HAE_B_18(2OW9)
MMP13_HUMAN
[Raw transfer]



HAE_A_4(4A7B)
MMP13_HUMAN
[Raw transfer]



HAE_A_17(2OW9)
MMP13_HUMAN
[Raw transfer]



HAE_B_18(3KEC)
MMP13_HUMAN
[Raw transfer]



EPE_B_22(3O2X)
MMP13_HUMAN
[Raw transfer]



HAE_B_12(4A7B)
MMP13_HUMAN
[Raw transfer]



HAE_A_11(3KEC)
MMP13_HUMAN
[Raw transfer]



EPE_B_16(3LJZ)
MMP13_HUMAN
[Raw transfer]



PEG_A_10(3TVC)
MMP13_HUMAN
[Raw transfer]



EPE_A_13(3O2X)
MMP13_HUMAN
[Raw transfer]



EPE_C_24(3LJZ)
MMP13_HUMAN
[Raw transfer]



CHAIN_C_3(4FVL)
?
[Raw transfer]
-
CHAIN_D_4(4FVL)
?
[Raw transfer]
-
CHAIN_W_5(4G0D)
MMP13_HUMAN
[Raw transfer]
-
CHAIN_B_2(4IN9)
?
[Raw transfer]
-
CHAIN_B_2(3AYU)
MMP2_HUMAN
[Raw transfer]
-
3 PsiBlast_PDB 93.7490%-116 - C3 -4G0D 12.0 MMP13_HUMAN
2 PsiBlast_PDB 92.9990%-114 - C3 -4FVL 12.7 ?
24 PsiBlast_CBE 92.5990%-113 - C3 -4FVL 10.1 ?
25 PsiBlast_CBE 91.9790%-113 - C3 -4FU4 Error MMP13_HUMAN
22 PsiBlast_CBE 91.9190%-114 - C3 -4G0D - ?
21 PsiBlast_CBE 91.5090%-112 - C3 -4G0D - ?
47 PsiBlast_CBE 48.6491%-103 - C3 -2OW9 9.8 MMP13_HUMAN
18 PsiBlast_PDB 48.0493%-101 - C3 -3TVC 8.3 MMP13_HUMAN
16 PsiBlast_PDB 48.0293% -99 - C3 -2YIG 8.7 MMP13_HUMAN
35 PsiBlast_CBE 48.0093%-100 - C3 -830C 6.5 ?
53 PsiBlast_CBE 47.9493%-102 - C3 -3KEC 10.4 MMP13_HUMAN
10 PsiBlast_PDB 47.8393% -97 - C3 -1XUC 9.3 MMP13_HUMAN
14 PsiBlast_PDB 47.7593% -99 - C3 -3I7G 7.3 MMP13_HUMAN
13 PsiBlast_PDB 47.6893% -95 - C3 -3ELM 8.8 MMP13_HUMAN
46 PsiBlast_CBE 47.6591%-102 - C3 -2OW9 8.7 MMP13_HUMAN
54 PsiBlast_CBE 47.5993%-102 - C3 -2D1N 7.6 MMP13_HUMAN
49 PsiBlast_CBE 47.5993%-104 - C3 -3KEK 11.3 MMP13_HUMAN
11 PsiBlast_PDB 47.5693% -96 - C3 -1XUD 9.3 MMP13_HUMAN
52 PsiBlast_CBE 47.5493% -99 - C3 -3KEC 11.2 MMP13_HUMAN
48 PsiBlast_CBE 47.4593%-107 - C3 -3KEK 10.9 MMP13_HUMAN
17 PsiBlast_PDB 47.3993% -97 - C3 -4A7B 8.1 MMP13_HUMAN
30 PsiBlast_CBE 47.3793%-100 - C3 -1XUR 8.0 MMP13_HUMAN
19 PsiBlast_PDB 47.3597%-104 - C3 -1CXV 7.3 MMP13_MOUSE
12 PsiBlast_PDB 47.3593% -96 - C3 -1XUR 8.1 MMP13_HUMAN
61 PsiBlast_CBE 47.3493%-103 - C3 -1ZTQ 8.1 MMP13_HUMAN
32 PsiBlast_CBE 47.3393% -99 - C3 -1XUC 9.1 MMP13_HUMAN
55 PsiBlast_CBE 47.2793%-100 - C3 -2D1N 7.8 MMP13_HUMAN
34 PsiBlast_CBE 47.1597%-102 - C3 -1CXV 7.2 MMP13_MOUSE
71 PsiBlast_CBE 47.0893%-103 - C3 -3O2X 10.1 MMP13_HUMAN
74 PsiBlast_CBE 47.0693%-104 - C3 -3LJZ 9.6 MMP13_HUMAN
58 PsiBlast_CBE 47.0693% -97 - C3 -2PJT 6.0 MMP13_HUMAN
69 PsiBlast_CBE 47.0593%-101 - C3 -3O2X 9.5 MMP13_HUMAN
29 PsiBlast_CBE 46.9193% -95 - C3 -2YIG 8.7 MMP13_HUMAN
15 PsiBlast_PDB 46.9193% -97 - C3 -3I7I 8.5 MMP13_HUMAN
51 PsiBlast_CBE 46.8293%-103 - C3 -3KEJ 11.5 MMP13_HUMAN
31 PsiBlast_CBE 46.7793% -96 - C3 -1XUD 9.8 MMP13_HUMAN
50 PsiBlast_CBE 46.6593%-106 - C3 -3KEJ 10.9 MMP13_HUMAN
28 PsiBlast_CBE 46.5793% -94 - C3 -3ELM 8.5 MMP13_HUMAN
57 PsiBlast_CBE 46.5693% -97 - C3 -2PJT 5.8 MMP13_HUMAN
66 PsiBlast_CBE 46.5493%-100 - C3 -3KRY 6.8 MMP13_HUMAN
63 PsiBlast_CBE 46.4593% -98 - C3 -1ZTQ 7.5 MMP13_HUMAN
26 PsiBlast_CBE 46.4293% -95 - C3 -3ZXH 6.5 MMP13_HUMAN
56 PsiBlast_CBE 46.4193% -98 - C3 -2PJT 6.2 MMP13_HUMAN
33 PsiBlast_CBE 46.2293% -94 - C3 -4A7B 8.3 MMP13_HUMAN
59 PsiBlast_CBE 46.1893% -97 - C3 -2PJT 6.0 MMP13_HUMAN
67 PsiBlast_CBE 46.0993% -98 - C3 -3KRY 6.8 MMP13_HUMAN
65 PsiBlast_CBE 45.8893% -96 - C3 -3KRY 6.9 MMP13_HUMAN
36 PsiBlast_CBE 45.8493% -95 - C3 -456C 6.4 MMP13_HUMAN
70 PsiBlast_CBE 45.6793% -97 - C3 -3O2X 9.5 MMP13_HUMAN
64 PsiBlast_CBE 45.4693% -94 - C3 -3KRY 7.0 MMP13_HUMAN
103 HHSearch 43.2064% -95 - C3 -3AYU 9.0 MMP2_HUMAN
73 PsiBlast_CBE 40.7193% -98 - C3 -3LJZ 2.9 MMP13_HUMAN
101 HHSearch 39.9758% -97 * C3 *4H1Q 10.1 MMP9_HUMAN
102 HHSearch 38.1753% -89 - C3 -1RM8 5.1 MMP16_HUMAN
99 HHSearch 37.8260% -86 - C3 -1I76 6.9 MMP8_HUMAN
108 HHSearch 36.4446% -84 - C3 -4IN9 6.5 ?