@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF01471_MMP14_: (2014-09-24 )
MSPAPRPPRCLLLPLLTLGTALASLGSAQSSSFSPEAWLQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQKFYGLQVTGKADADTMKAMRRPRCGVPDKFGAEIKANVRRKRYAIQGLKWQHNEITFCIQNYTPKVGEYATYEAIRKAFRVWESATPLRFREVPYAYIREGHEKQADIMIFFAEGFHGDSTPFDGEGGFLAHAYFPGPNIGGDTHFDSAEPWTVRNEDLNGNDIFLVAVHELGHALGLEHSSDPSAIMAPFYQWMDTENFVLPDDDRRGIQQLYGGESGFPTKMPPQPRTTSRPSVPDKPKNPTYGPNICDGNFDTVAMLRGEMFVFKERWFWRVRNNQVMDGYPMPIGQFWRGLPASINTAYERKDGKFVFFKGDKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRGNKYYRFNEELRAVDSEYPKNIKVWEGIPESPRGSFMGSDEVFTYFYKGNKYWKFNNQKLKVEPGYPKSALRDWMGCPSGGRPDEGTEEETEVIIIEVDEEGGGAVSAAAVVLPVLLLLLVLAVGLAVFFFRRHGTPRRLLYCQRSLLDKV

Atome Classification :

(14 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

0XX_A_9(4H1Q)
MMP9_HUMAN
[Raw transfer]



NGH_A_7(1RMZ)
MMP12_HUMAN
[Raw transfer]



BAT_A_6(1RM8)
MMP16_HUMAN
[Raw transfer]



BAT_A_6(1RM8)
MMP16_HUMAN
[Raw transfer]



HTA_A_8(1FBL)
MMP1_PIG
[Raw transfer]



BSI_A_6(1I76)
MMP8_HUMAN
[Raw transfer]



37A_A_7(2HU6)
MMP12_HUMAN
[Raw transfer]



GOL_A_9(4IN9)
?
[Raw transfer]



GOL_A_8(4IN9)
?
[Raw transfer]



HAE_A_8(2HU6)
MMP12_HUMAN
[Raw transfer]



HAE_A_8(3BA0)
MMP12_HUMAN
[Raw transfer]



HAE_A_8(3BA0)
MMP12_HUMAN
[Raw transfer]



CPS_A_25(1HV5)
MMP11_MOUSE
[Raw transfer]



CHAIN_X_2(2OXW)
MMP12_HUMAN
[Raw transfer]
-
PGO_A_18(4FVL)
?
[Raw transfer]



CHAIN_B_2(4IN9)
?
[Raw transfer]
-
CHAIN_X_3(2OXZ)
MMP12_HUMAN
[Raw transfer]
-
0XX_B_15(4H1Q)
MMP9_HUMAN
[Raw transfer]



CHAIN_B_2(3AYU)
MMP2_HUMAN
[Raw transfer]
-
CHAIN_C_3(4FVL)
?
[Raw transfer]
-
CHAIN_C_3(4FVL)
?
[Raw transfer]
-
CHAIN_W_5(4G0D)
MMP13_HUMAN
[Raw transfer]
-
32 HHSearch 72.7440% -92 - C1 -4FVL 11.1 ?
31 HHSearch 64.4841% -92 - C1 -3BA0 2.4 MMP12_HUMAN
11 PsiBlast_PDB 64.2937% -87 - C1 -1FBL 6.4 MMP1_PIG
10 PsiBlast_PDB 64.2439% -79 - C1 -4G0D 8.4 MMP13_HUMAN
44 HHSearch 45.4769% -97 - C1 -1RM8 7.1 MMP16_HUMAN
17 PsiBlast_PDB 40.3649% -92 - C1 -2HU6 7.2 MMP12_HUMAN
20 PsiBlast_PDB 39.8449% -90 - C1 -2OXZ 4.4 MMP12_HUMAN
16 PsiBlast_PDB 39.6849% -90 - C1 -1RMZ 5.1 MMP12_HUMAN
52 HHSearch 38.8248% -90 - C1 -1I76 7.5 MMP8_HUMAN
19 PsiBlast_PDB 38.7949% -87 - C1 -2OXW 2.4 MMP12_HUMAN
51 HHSearch 38.4548% -89 * C1 *4H1Q 10.0 MMP9_HUMAN
53 HHSearch 38.0350% -84 - C1 -3AYU 9.6 MMP2_HUMAN
48 HHSearch 34.6741% -83 - C1 -4IN9 7.4 ?
54 HHSearch 33.8244% -81 - C1 -1HV5 4.1 MMP11_MOUSE