@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF01471_MMP1_H: (2014-09-24 )
MHSFPPLLLLLFWGVVSHSFPATLETQEQDVDLVQKYLEKYYNLKNDGRQVEKRRNSGPVVEKLKQMQEFFGLKVTGKPDAETLKVMKQPRCGVPDVAQFVLTEGNPRWEQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVAAHELGHSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIYGRSQNPVQPIGPQTPKACDSKLTFDAITTIRGEVMFFKDRFYMRTNPFYPEVELNFISVFWPQLPNGLEAAYEFADRDEVRFFKGNKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVANKYWRYDEYKRSMDPGYPKMIAHDFPGIGHKVDAVFMKDGFFYFFHGTRQYKFDPKTKRILTLQKANSWFNCRKN

Atome Classification :

(17 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

0ED_B_10(1CGL)
MMP1_HUMAN
[Raw transfer]



HTA_A_8(1FBL)
MMP1_PIG
[Raw transfer]



0XX_A_9(4H1Q)
MMP9_HUMAN
[Raw transfer]



PLH_A_5(1HFC)
MMP1_HUMAN
[Raw transfer]



RO4_A_7(2TCL)
MMP1_HUMAN
[Raw transfer]



EIN_A_6(1ZS0)
MMP8_HUMAN
[Raw transfer]



BSI_A_6(1I76)
MMP8_HUMAN
[Raw transfer]



BAT_A_6(1RM8)
MMP16_HUMAN
[Raw transfer]



HLE_A_11(1KBC)
MMP8_HUMAN
[Raw transfer]



BSI_A_6(1BZS)
MMP8_HUMAN
[Raw transfer]



2NI_A_6(1ZP5)
MMP8_HUMAN
[Raw transfer]



EPE_B_24(1SU3)
MMP1_HUMAN
[Raw transfer]



0ED_A_6(1CGL)
MMP1_HUMAN
[Raw transfer]



CHAIN_I_2(1JAP)
MMP8_HUMAN
[Raw transfer]
-
PGO_A_18(4FVL)
?
[Raw transfer]



0XX_B_15(4H1Q)
MMP9_HUMAN
[Raw transfer]



CHAIN_B_2(1I73)
MMP8_HUMAN
[Raw transfer]
-
CHAIN_W_5(4G0D)
MMP13_HUMAN
[Raw transfer]
-
CHAIN_C_3(4FVL)
?
[Raw transfer]
-
CHAIN_C_3(4FVL)
?
[Raw transfer]
-
CHAIN_B_2(3AYU)
MMP2_HUMAN
[Raw transfer]
-
21 PsiBlast_CBE 98.26100%-101 - C1 -1SU3 2.3 MMP1_HUMAN
4 PsiBlast_PDB 85.6087%-108 - C1 -1FBL 5.9 MMP1_PIG
7 PsiBlast_PDB 75.8951%-103 - C1 -4G0D 7.6 MMP13_HUMAN
36 HHSearch 75.4850%-102 - C1 -4FVL 10.0 ?
10 PsiBlast_PDB 45.81100% -92 - C1 -1HFC 6.1 MMP1_HUMAN
26 PsiBlast_CBE 45.2298% -92 - C1 -1CGL 7.5 MMP1_HUMAN
11 PsiBlast_PDB 45.15100% -81 - C1 -2TCL 6.3 MMP1_HUMAN
16 PsiBlast_PDB 41.2866% -82 - C1 -1I73 5.1 MMP8_HUMAN
14 PsiBlast_PDB 41.2566% -83 - C1 -1BZS 7.2 MMP8_HUMAN
13 PsiBlast_PDB 41.1766% -82 - C1 -1KBC 6.8 MMP8_HUMAN
19 PsiBlast_PDB 41.1366% -82 - C1 -1ZP5 5.9 MMP8_HUMAN
17 PsiBlast_PDB 40.8566% -80 - C1 -1I76 7.3 MMP8_HUMAN
51 HHSearch 39.9953% -79 - C1 -3AYU 7.9 MMP2_HUMAN
20 PsiBlast_PDB 39.6766% -76 - C1 -1ZS0 7.0 MMP8_HUMAN
15 PsiBlast_PDB 39.1666% -79 - C1 -1JAP 4.3 MMP8_HUMAN
54 HHSearch 38.3552% -83 - C1 -1RM8 5.1 MMP16_HUMAN
50 HHSearch 37.9054% -74 - C1 -4H1Q 8.4 MMP9_HUMAN