@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF01471_MMP3_H: (2014-09-24 )
MKSLPILLLLCVAVCSAYPLDGAARGEDTSMNLVQKYLENYYDLKKDVKQFVRRKDSGPVVKKIREMQKFLGLEVTGKLDSDTLEVMRKPRCGVPDVGHFRTFPGIPKWRKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPPDSPETPLVPTEPVPPEPGTPANCDPALSFDAVSTLRGEILIFKDRHFWRKSLRKLEPELHLISSFWPSLPSGVDAAYEVTSKDLVFIFKGNQFWAIRGNEVRAGYPRGIHTLGFPPTVRKIDAAISDKEKNKTYFFVEDKYWRFDEKRNSMEPGFPKQIAEDFPGIDSKIDAVFEEFGFFYFFTGSSQLEFDPNAKKVTHTLKSNSWLNC

Atome Classification :

(37 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

Z79_A_7(3OHO)
MMP3_HUMAN
[Raw transfer]



IN7_A_8(1B8Y)
MMP3_HUMAN
[Raw transfer]



OHL_A_7(3OHL)
MMP3_HUMAN
[Raw transfer]



SPI_B_13(1D8F)
MMP3_HUMAN
[Raw transfer]



SPC_B_14(1D7X)
MMP3_HUMAN
[Raw transfer]



N25_B_13(1BQO)
MMP3_HUMAN
[Raw transfer]



SPC_A_13(1D7X)
MMP3_HUMAN
[Raw transfer]



111_B_13(1G49)
MMP3_HUMAN
[Raw transfer]



0XX_A_9(4H1Q)
MMP9_HUMAN
[Raw transfer]



NGH_A_20(1Q3A)
MMP10_HUMAN
[Raw transfer]



NGH_B_13(4G9L)
MMP3_HUMAN
[Raw transfer]



BBH_B_13(1D8M)
MMP3_HUMAN
[Raw transfer]



MM3_A_13(1D5J)
MMP3_HUMAN
[Raw transfer]



FA4_B_14(2D1O)
MMP3_HUMAN
[Raw transfer]



NGH_B_21(4DPE)
MMP3_HUMAN
[Raw transfer]



GOL_B_22(1G4K)
MMP3_HUMAN
[Raw transfer]



MM3_B_14(1D5J)
MMP3_HUMAN
[Raw transfer]



FA4_A_13(2D1O)
MMP3_HUMAN
[Raw transfer]



NGH_B_15(4JA1)
MMP3_HUMAN
[Raw transfer]



L04_A_7(1HFS)
MMP3_HUMAN
[Raw transfer]



BBH_B_13(1G05)
MMP3_HUMAN
[Raw transfer]



S27_B_13(1B3D)
MMP3_HUMAN
[Raw transfer]



S80_B_13(1BIW)
MMP3_HUMAN
[Raw transfer]



BSI_A_6(1I76)
MMP8_HUMAN
[Raw transfer]



HTA_A_8(1FBL)
MMP1_PIG
[Raw transfer]



MBS_B_13(1HY7)
MMP3_HUMAN
[Raw transfer]



BAT_A_6(1RM8)
MMP16_HUMAN
[Raw transfer]



TR1_B_13(1C3I)
MMP3_HUMAN
[Raw transfer]



TR1_A_13(1C8T)
MMP3_HUMAN
[Raw transfer]



IN8_A_8(2USN)
MMP3_HUMAN
[Raw transfer]



FA4_B_14(2D1O)
MMP3_HUMAN
[Raw transfer]



FA4_A_13(2D1O)
MMP3_HUMAN
[Raw transfer]



CHAIN_B_2(4IN9)
?
[Raw transfer]
-
CHAIN_B_2(3AYU)
MMP2_HUMAN
[Raw transfer]
-
CHAIN_W_5(4G0D)
MMP13_HUMAN
[Raw transfer]
-
CHAIN_C_3(4FVL)
?
[Raw transfer]
-
7 PsiBlast_PDB 84.4451% -97 - C3 -4G0D 5.6 MMP13_HUMAN
81 HHSearch 83.9052% -97 - C3 -4FVL 11.4 ?
2 PsiBlast_PDB 82.5454% -95 - C3 -1FBL 5.3 MMP1_PIG
30 PsiBlast_CBE 63.71100%-104 - C3 -1D8M 5.6 MMP3_HUMAN
27 PsiBlast_CBE 63.28100%-100 - C3 -1HY7 7.2 MMP3_HUMAN
40 PsiBlast_CBE 62.85100%-102 - C3 -2D1O 8.2 MMP3_HUMAN
28 PsiBlast_CBE 62.74100%-100 - C3 -1G49 6.0 MMP3_HUMAN
33 PsiBlast_CBE 62.69100%-100 - C3 -1D5J 5.6 MMP3_HUMAN
37 PsiBlast_CBE 62.53100%-101 - C3 -1BIW 6.6 MMP3_HUMAN
36 PsiBlast_CBE 62.44100%-100 - C3 -1BQO 5.9 MMP3_HUMAN
38 PsiBlast_CBE 62.37100% -99 - C3 -1B3D 5.9 MMP3_HUMAN
31 PsiBlast_CBE 62.28100% -98 - C3 -1D8F 5.6 MMP3_HUMAN
29 PsiBlast_CBE 62.18100% -98 - C3 -1G05 5.5 MMP3_HUMAN
53 PsiBlast_CBE 61.96100%-107 - C3 -2USN 6.4 MMP3_HUMAN
32 PsiBlast_CBE 61.93100% -97 - C3 -1D7X 4.9 MMP3_HUMAN
48 PsiBlast_CBE 61.52100%-106 - C3 -1B8Y 8.9 MMP3_HUMAN
35 PsiBlast_CBE 61.52100% -96 - C3 -1C3I 9.4 MMP3_HUMAN
39 PsiBlast_CBE 61.50100% -99 - C3 -2D1O 7.9 MMP3_HUMAN
41 PsiBlast_CBE 61.26100%-104 - C3 -3OHO 4.1 MMP3_HUMAN
47 PsiBlast_CBE 60.90100%-102 - C3 -3OHL 5.5 MMP3_HUMAN
43 PsiBlast_CBE 60.86100%-101 - C3 -1G4K 2.3 MMP3_HUMAN
52 PsiBlast_CBE 60.5999%-102 - C3 -1C8T 8.7 MMP3_HUMAN
23 PsiBlast_CBE 60.46100% -98 - C3 -4G9L 5.0 MMP3_HUMAN
15 PsiBlast_PDB 60.16100% -95 - C3 -1D7X 5.4 MMP3_HUMAN
17 PsiBlast_PDB 59.79100% -96 - C3 -1D5J 5.5 MMP3_HUMAN
51 PsiBlast_CBE 59.7599%-100 - C3 -1C8T - MMP3_HUMAN
25 PsiBlast_CBE 59.69100% -94 - C3 -4DPE 5.1 MMP3_HUMAN
21 PsiBlast_CBE 59.59100% -93 - C3 -4JA1 4.8 MMP3_HUMAN
62 PsiBlast_CBE 57.92100% -98 - C3 -1HFS 13.0 MMP3_HUMAN
66 PsiBlast_CBE 53.7984% -98 - C3 -1Q3A - MMP10_HUMAN
67 PsiBlast_CBE 53.7584% -91 - C3 -1Q3A - MMP10_HUMAN
68 PsiBlast_CBE 53.6784% -94 - C3 -1Q3A 3.5 MMP10_HUMAN
100 HHSearch 50.3060% -93 * C3 *3AYU 7.6 MMP2_HUMAN
98 HHSearch 46.3357% -91 - C3 -4H1Q 9.0 MMP9_HUMAN
95 HHSearch 46.2355% -89 - C3 -1I76 7.3 MMP8_HUMAN
99 HHSearch 45.9051% -89 - C3 -1RM8 6.4 MMP16_HUMAN
104 HHSearch 40.9043% -85 - C3 -4IN9 6.2 ?