@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF01471_MMP8_R: (2014-09-24 )
MLHLKTLPFLFFFHTQLATALPVPPEHLEEKNMKTAENYLRKFYHLPSNQFRSARNATMIAEKLKEMQRFFGLPETGKPDAATIEIMEKPRCGVPDSGDFLLTPGSPKWTHTNLTYRIINHTPQMSKAEVKTEIEKAFKIWSVPSTLTFTETLEGEADINIAFVSRDHGDNSPFDGPNGILAHAFQPGRGIGGDAHFDSEETWTQDSKNYNLFLVAAHEFGHSLGLSHSTDPGALMYPNYAYREPSTYSLPQDDINGIQTIYGPSDNPVQPTGPSTPTACDPHLRFDAATTLRGEIYFFKDKYFWRRHPQLRTVDLNFISLFWPFLPNGLQAAYEDFDRDLVFLFKGRQYWALSAYDLQQGYPRDISNYGFPRSVQAIDAAVSYNGKTYFFVNNQCWRYDNQRRSMDPGYPTSIASVFPGINCRIDAVFQQDSFFLFFSGPQYFAFNLVSRRVTRVARSNLWLNCP

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

0XX_A_9(4H1Q)
MMP9_HUMAN
[Raw transfer]




AXB_B_13(3DPF)
MMP8_HUMAN
[Raw transfer]




FIN_A_6(1ZVX)
MMP8_HUMAN
[Raw transfer]




BSI_A_6(1I76)
MMP8_HUMAN
[Raw transfer]




EIN_A_6(1ZS0)
MMP8_HUMAN
[Raw transfer]




BSI_A_6(1I76)
MMP8_HUMAN
[Raw transfer]




0ZB_A_2(1A86)
MMP8_HUMAN
[Raw transfer]




AXB_A_11(3DPF)
MMP8_HUMAN
[Raw transfer]




BSI_A_6(1BZS)
MMP8_HUMAN
[Raw transfer]




AXB_A_6(3DPE)
MMP8_HUMAN
[Raw transfer]




E1S_A_6(3TT4)
MMP8_HUMAN
[Raw transfer]




HTA_A_8(1FBL)
MMP1_PIG
[Raw transfer]




GOL_A_14(4FVL)
?
[Raw transfer]




PLH_A_5(1MNC)
MMP8_HUMAN
[Raw transfer]




2NI_A_6(1ZP5)
MMP8_HUMAN
[Raw transfer]




HLE_B_12(1KBC)
MMP8_HUMAN
[Raw transfer]




HLE_A_11(1KBC)
MMP8_HUMAN
[Raw transfer]




BAT_A_6(1RM8)
MMP16_HUMAN
[Raw transfer]




AXA_B_12(3DNG)
MMP8_HUMAN
[Raw transfer]




AXA_A_11(3DNG)
MMP8_HUMAN
[Raw transfer]




JST_A_6(1JH1)
MMP8_HUMAN
[Raw transfer]




CHAIN_I_2(1JAP)
MMP8_HUMAN
[Raw transfer]

-

CHAIN_W_2(2OY2)
MMP8_HUMAN
[Raw transfer]

-

CHAIN_Y_4(2OY2)
MMP8_HUMAN
[Raw transfer]

-

PGO_A_18(4FVL)
?
[Raw transfer]




0XX_B_15(4H1Q)
MMP9_HUMAN
[Raw transfer]




CHAIN_B_2(4IN9)
?
[Raw transfer]

-

CHAIN_B_2(1I73)
MMP8_HUMAN
[Raw transfer]

-

MES_A_7(3TT4)
MMP8_HUMAN
[Raw transfer]




HAE_A_12(3DPF)
MMP8_HUMAN
[Raw transfer]




CHAIN_C_3(4FVL)
?
[Raw transfer]

-

CHAIN_C_3(4FVL)
?
[Raw transfer]

-

CHAIN_B_2(3AYU)
MMP2_HUMAN
[Raw transfer]

-

CHAIN_W_5(4G0D)
MMP13_HUMAN
[Raw transfer]

-

2 PsiBlast_PDB 84.2259%-113 - C1 -1FBL 5.0 MMP1_PIG
7 PsiBlast_PDB 83.7352%-112 - C1 -4G0D 8.8 MMP13_HUMAN
43 HHSearch 83.6352%-114 - C1 -4FVL 9.8 ?
19 PsiBlast_PDB 47.9977% -78 - C1 -3DPE 9.2 MMP8_HUMAN
21 PsiBlast_CBE 47.6878% -76 - C1 -1KBC 7.1 MMP8_HUMAN
10 PsiBlast_PDB 47.4278% -79 - C1 -1KBC 6.5 MMP8_HUMAN
12 PsiBlast_PDB 47.4077% -79 - C1 -1I73 5.3 MMP8_HUMAN
22 PsiBlast_CBE 47.3977% -81 - C1 -3DPF 9.3 MMP8_HUMAN
23 PsiBlast_CBE 47.2177% -80 - C1 -3DNG 9.3 MMP8_HUMAN
9 PsiBlast_PDB 46.8178% -75 - C1 -1BZS 7.4 MMP8_HUMAN
15 PsiBlast_PDB 46.7077% -76 - C1 -1ZP5 6.7 MMP8_HUMAN
20 PsiBlast_PDB 46.6377% -74 - C1 -3DPF 9.6 MMP8_HUMAN
58 HHSearch 46.5378% -76 - C1 -1I76 7.6 MMP8_HUMAN
17 PsiBlast_PDB 46.4277% -76 - C1 -1ZVX 6.8 MMP8_HUMAN
18 PsiBlast_PDB 46.4077% -76 - C1 -3DNG 9.3 MMP8_HUMAN
16 PsiBlast_PDB 45.8177% -73 - C1 -1ZS0 7.2 MMP8_HUMAN
30 PsiBlast_CBE 45.1877% -76 - C1 -1JH1 3.6 MMP8_HUMAN
11 PsiBlast_PDB 45.0577% -75 - C1 -1JAP 4.3 MMP8_HUMAN
29 PsiBlast_CBE 44.8977% -75 - C1 -2OY2 4.9 MMP8_HUMAN
24 PsiBlast_CBE 44.8977% -71 - C1 -1MNC 6.2 MMP8_HUMAN
31 PsiBlast_CBE 44.7577% -74 - C1 -1A86 6.8 MMP8_HUMAN
28 PsiBlast_CBE 44.6577% -75 - C1 -2OY2 4.8 MMP8_HUMAN
25 PsiBlast_CBE 44.5777% -72 - C1 -3TT4 7.1 MMP8_HUMAN
64 HHSearch 42.1151% -73 - C1 -3AYU 8.7 MMP2_HUMAN
60 HHSearch 40.6053% -71 * C1 *1RM8 6.6 MMP16_HUMAN
62 HHSearch 39.5350% -71 - C1 -4H1Q 9.1 MMP9_HUMAN
66 HHSearch 36.7041% -71 - C1 -4IN9 6.4 ?