@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF01751_GYRB_E: (2014-09-27 )
MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DOO_B_7(4KFG)
?
[Raw transfer]



ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]



ANP_A_7(1S16)
PARE_ECOLI
[Raw transfer]



ANP_A_7(1S16)
PARE_ECOLI
[Raw transfer]



DOO_A_5(4KFG)
?
[Raw transfer]



GOL_A_9(1EI1)
GYRB_ECOLI
[Raw transfer]



ANP_B_7(1EI1)
GYRB_ECOLI
[Raw transfer]



B46_A_2(3G7E)
GYRB_ECOLI
[Raw transfer]



RLI_B_4(4DUH)
GYRB_ECOLI
[Raw transfer]



DOO_A_5(4KQV)
?
[Raw transfer]



RLI_A_3(4DUH)
GYRB_ECOLI
[Raw transfer]



DOO_A_2(4K4O)
?
[Raw transfer]



1YP_A_2(4LPB)
?
[Raw transfer]



1A1_C_9(4HYP)
GYRB_ECOLI
[Raw transfer]



2B7_A_2(4MOT)
?
[Raw transfer]



CJC_A_3(4HYM)
?
[Raw transfer]



1A1_D_11(4HYP)
GYRB_ECOLI
[Raw transfer]



28G_A_2(4MBC)
?
[Raw transfer]



1A1_B_7(4HYP)
GYRB_ECOLI
[Raw transfer]



1A1_A_5(4HYP)
GYRB_ECOLI
[Raw transfer]



NOV_A_3(1KIJ)
?
[Raw transfer]



NOV_A_3(1KIJ)
?
[Raw transfer]



1EU_A_3(3FV5)
PARE_ECOLI
[Raw transfer]



28F_A_3(4MB9)
?
[Raw transfer]



NOV_B_2(1AJ6)
GYRB_ECOLI
[Raw transfer]



07N_A_3(3TTZ)
GYRB_STAAU
[Raw transfer]



0RA_A_2(4EM7)
?
[Raw transfer]



19Y_A_3(4HXZ)
?
[Raw transfer]
21 PsiBlast_CBE 97.0799% -77 - C2 -1EI1 8.6 GYRB_ECOLI
28 Fugue 96.2399% -77 - C2 -1EI1 8.3 GYRB_ECOLI
43 HHSearch 77.7548% -74 - C2 -1KIJ 7.1 ?
40 HHSearch 69.4436% -68 - C2 -1S16 9.8 PARE_ECOLI
14 PsiBlast_PDB 67.3536% -71 - C2 -4KQV 6.3 ?
12 PsiBlast_PDB 66.8436% -72 - C2 -4HXZ 5.2 ?
13 PsiBlast_PDB 66.8336% -66 - C2 -4HYM 7.0 ?
25 PsiBlast_CBE 54.99100% -82 - C2 -4HYP 7.1 GYRB_ECOLI
26 PsiBlast_CBE 54.69100% -83 - C2 -4HYP 6.8 GYRB_ECOLI
24 PsiBlast_CBE 54.57100% -81 - C2 -4HYP 7.4 GYRB_ECOLI
4 PsiBlast_PDB 53.94100% -80 - C2 -4HYP 6.9 GYRB_ECOLI
3 PsiBlast_PDB 53.6899% -79 - C2 -1AJ6 5.6 GYRB_ECOLI
5 PsiBlast_PDB 53.22100% -76 - C2 -4KFG 7.5 ?
22 PsiBlast_CBE 53.03100% -74 - C2 -4DUH 7.2 GYRB_ECOLI
6 PsiBlast_PDB 52.61100% -66 - C2 -3G7E 7.5 GYRB_ECOLI
2 PsiBlast_PDB 52.16100% -72 - C2 -4DUH 6.8 GYRB_ECOLI
23 PsiBlast_CBE 51.77100% -74 - C2 -4KFG 7.5 ?
16 PsiBlast_PDB 44.3053% -70 - C2 -4MB9 4.5 ?
17 PsiBlast_PDB 44.1353% -71 - C2 -4MBC 5.6 ?
19 PsiBlast_PDB 43.2153% -68 - C2 -4MOT 5.6 ?
18 PsiBlast_PDB 43.0853% -67 - C2 -4LPB 6.6 ?
15 PsiBlast_PDB 42.4753% -67 - C2 -4EM7 5.0 ?
59 HHSearch 41.4056% -64 - C2 -4K4O 7.5 ?
57 HHSearch 40.2456% -57 - C2 -3TTZ 6.2 GYRB_STAAU
60 HHSearch 40.0847% -66 * C2 *3FV5 5.8 PARE_ECOLI