@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF01833_MET_CA: (2014-09-28 )
MKAPAVLAPGILVLLFTLVQKSYGECKEALVKSEMNVNMKYQLPNFTAETPIQNVVLHKHHIYLGAVNYIYVLNDKDLQKVAEYKTGPVLEHPDCSPCQDCSHKANLSGGVWEDNINMALLVDTYYDDQLISCGSVHRGTCQRHILPPSNIADIQSEVHCMYSSQADEEPSQCPDCVVSALGTKVLISEKDRFINFFVGNTINSSDHPDHSLHSISVRRLKETQDGFKFLTDQSYIDVLPEFRDSYPIKYVHAFESNHFIYFLTVQRETLDAQTFHTRIIRFCSVDSGLHSYMEMPLECILTEKRRKRSTREEVFNILQAAYVSKPGAHLAKQIGANLNDDILYGVFAQSKPDSAEPMNRSAVCAFPIKYVNEFFNKIVNKNNVRCLQHFYGPNHEHCFNRTLLRNSSGCEARNDEYRTEFTTALQRVDLFMGQFNQVLLTSISTFIKGDLTIANLGTSEGRFMQVVVSRSGLSTPHVNFRLDSHPVSPEAIVEHPLNQNGYTLVVTGKKITRIPLNGLGCEHFQSCSQCLSAPPFVQCGWCHDRCVHLEECPTGAWTQEVCLPAIYEVFPTSAPLEGGTVLTVCGWDFGFRRNNKFDLKKTKVFLGNESCTLTLSESTTNMLKCTVGPAVNEHFNISIIISNGRGTAQYSTFSYVDPIITSISPSYGPKNGGTLLTLTGKYLNSGNSRHISMGGKTCTLKSVSDSILECYTPAQATATEFPIKLKIDLANREMNSFSYQEDPIVYAIHPTKSFISGGSTITAVGKNLNSVSVLRMVIDVHETRRNFTVACQHRSNSEIICCTTPSLQQLNLQLPLKTKAFFMLDGIHSKYFDLIYVHNPVFKPFEKPVMISIGNENVLEIKGNDIDPEAVKGEVLKVGNKSCETIYSDSKAVLCKVPNDLLKLNNELNIEWKQAVSSTVLGKVIVQPDQNFTGLIAGVISISTIVLLLLGLFLWLKRKKQIKDLGSELVRYDARVHTPHLDRLVSARSVSPTTEMVSNESVDYRATFPEDQFPNSSQNGSCRQVQYPLTDLSPMLTSGDSDISSPLLQNTVHIDLSALNPELVQAVQHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDDKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPRAELRPSFSELVSRISAIFSTFIGEHYVHVNATYVNVKCVAPYPSLLSSQDNIDGEGDT

Atome Classification :

(44 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

0JK_A_2(4DEH)

[Raw transfer]




SX8_A_3(3DKF)

[Raw transfer]




4K0_A_2(4AOI)

[Raw transfer]




0JL_A_2(4DEI)

[Raw transfer]




3QT_B_5(3QTI)

[Raw transfer]




3QT_A_3(3QTI)
MET_HUMAN
[Raw transfer]




SX8_A_3(3DKG)

[Raw transfer]




L5G_A_2(3CD8)

[Raw transfer]




M97_A_3(3RHK)
MET_HUMAN
[Raw transfer]




L1X_A_2(4EEV)

[Raw transfer]




0JJ_A_2(4DEG)

[Raw transfer]




B2D_A_2(3I5N)

[Raw transfer]




044_A_2(3U6I)

[Raw transfer]




LKG_A_2(3CCN)

[Raw transfer]




0J3_A_2(4GG5)

[Raw transfer]




ZZY_A_2(2WD1)

[Raw transfer]




DF6_A_2(3VW8)

[Raw transfer]




03X_A_2(3U6H)

[Raw transfer]




0J8_A_2(4GG7)

[Raw transfer]




ATP_A_4(3DKC)

[Raw transfer]




MT4_B_4(3EFK)

[Raw transfer]




88Z_A_2(3LQ8)

[Raw transfer]




319_A_2(3CTH)

[Raw transfer]




MT3_B_4(3EFJ)

[Raw transfer]




CKK_A_2(3C1X)

[Raw transfer]




AM8_A_2(2RFS)

[Raw transfer]




MT3_A_3(3EFJ)
MET_HUMAN
[Raw transfer]




MT4_A_3(3EFK)
MET_HUMAN
[Raw transfer]




DFQ_A_5(3A4P)

[Raw transfer]




1FN_A_2(3CE3)

[Raw transfer]




L8V_A_2(3L8V)

[Raw transfer]




ANP_A_3(3PLS)

[Raw transfer]




AM7_B_4(2RFN)

[Raw transfer]




353_A_2(3F82)

[Raw transfer]




LUN_A_2(3QUP)

[Raw transfer]




KSA_B_2(1R0P)

[Raw transfer]




GOL_A_2(3L9P)

[Raw transfer]




320_A_2(3CTJ)

[Raw transfer]




M97_B_4(3RHK)

[Raw transfer]




AM7_A_3(2RFN)
MET_HUMAN
[Raw transfer]




IHX_B_7(3F66)

[Raw transfer]




STU_B_2(1BYG)
CSK_HUMAN
[Raw transfer]




IHX_A_3(3F66)
MET_HUMAN
[Raw transfer]




STU_A_3(3CBL)

[Raw transfer]




GBL_B_8(3F66)

[Raw transfer]




GBL_A_4(3F66)
MET_HUMAN
[Raw transfer]




IPA_A_3(3A4P)

[Raw transfer]




GBL_A_3(2WD1)

[Raw transfer]




32 PsiBlast_CBE 60.8599%-124 - C1 -4DEI 10.0
33 PsiBlast_CBE 60.2899%-126 - C1 -4DEH 9.0
49 PsiBlast_CBE 59.9098%-120 - C1 -3F66 6.6 MET_HUMAN
34 PsiBlast_CBE 59.7499%-125 - C1 -4DEG 9.8
37 PsiBlast_CBE 59.5699%-125 - C1 -3I5N 10.0
21 PsiBlast_CBE 59.5699%-122 - C1 -3RHK 9.3
17 PsiBlast_PDB 59.3899%-119 - C1 -3RHK 9.4 MET_HUMAN
19 PsiBlast_PDB 59.2497%-126 - C1 -3DKG 7.2
39 PsiBlast_CBE 59.1798%-122 - C1 -4AOI 9.7
35 PsiBlast_CBE 59.1399%-124 - C1 -3U6I 11.7
20 PsiBlast_PDB 59.1297%-126 - C1 -3QTI 9.8 MET_HUMAN
12 PsiBlast_PDB 59.0898%-120 - C1 -1R0P 9.7
36 PsiBlast_CBE 58.7699%-121 - C1 -3U6H 11.2
66 HHSearch 58.5298%-124 - C1 -3C1X 11.1
10 PsiBlast_PDB 58.0898%-124 - C1 -3DKF 9.3
28 PsiBlast_CBE 58.0198%-123 - C1 -3CCN 9.0
27 PsiBlast_CBE 57.9798%-123 - C1 -3CD8 10.4
9 PsiBlast_PDB 57.9498%-112 - C1 -3DKC 6.7
7 PsiBlast_PDB 57.8298%-119 - C1 -3L8V 9.7
2 PsiBlast_PDB 57.8298%-113 - C1 -3VW8 10.4
24 PsiBlast_CBE 57.6898%-122 - C1 -3EFK 10.8 MET_HUMAN
50 PsiBlast_CBE 57.3798%-118 - C1 -2WD1 6.8
47 PsiBlast_CBE 57.3298%-119 - C1 -3LQ8 11.3
26 PsiBlast_CBE 57.1798%-120 - C1 -3EFJ 10.7 MET_HUMAN
18 PsiBlast_PDB 56.9099%-119 - C1 -4EEV 12.0
31 PsiBlast_CBE 56.6098%-127 - C1 -2RFN 10.6 MET_HUMAN
22 PsiBlast_CBE 56.5597%-124 - C1 -3QTI 9.8
23 PsiBlast_CBE 56.3798%-121 - C1 -3EFK 10.7
6 PsiBlast_PDB 55.7898%-120 - C1 -3F82 11.1
5 PsiBlast_PDB 55.6898%-118 - C1 -3CE3 9.7
4 PsiBlast_PDB 55.5098%-120 - C1 -3CTJ 9.6
3 PsiBlast_PDB 55.4498%-119 - C1 -3CTH 8.6
48 PsiBlast_CBE 55.2298%-121 - C1 -3F66 6.4
30 PsiBlast_CBE 55.1598%-120 - C1 -2RFN 10.4
11 PsiBlast_PDB 54.5098%-116 - C1 -3A4P 8.7
25 PsiBlast_CBE 54.1698%-116 - C1 -3EFJ 9.8
29 PsiBlast_CBE 53.6098%-120 - C1 -2RFS 8.3
14 PsiBlast_PDB 52.7699%-114 - C1 -4GG5 8.9
15 PsiBlast_PDB 52.5699%-108 - C1 -4GG7 9.1
65 HHSearch 49.3161%-109 - C1 -3PLS 4.8
74 HHSearch 38.3043%-106 * C1 *3QUP 7.3
75 HHSearch 37.3238% -88 - C1 -3CBL 8.3
84 HHSearch 35.4836% -87 - C1 -3L9P 2.5
53 Fugue 33.7639% -91 - C1 -1BYG 7.1 CSK_HUMAN