@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF02146_SIR1_H: (2014-09-28 )
MADEAALALQPGGSPSAAGADREAASSPAGEPLRKRPRRDGPGLERSPGEPGGAAPEREVPAAARGCPGAAAAALWREAEAEAAAAGGEQEAQATAAAGEGDNGPGLQGPSREPPLADNLYDEDDDDEGEEEEEAAAAAIGYRDNLLFGDEIITNGFHSCESDEEDRASHASSSDWTPRPRIGPYTFVQQHLMIGTDPRTILKDLLPETIPPPELDDMTLWQIVINILSEPPKRKKRKDINTIEDAVKLLQECKKIIVLTGAGVSVSCGIPDFRSRDGIYARLAVDFPDLPDPQAMFDIEYFRKDPRPFFKFAKEIYPGQFQPSLCHKFIALSDKEGKLLRNYTQNIDTLEQVAGIQRIIQCHGSFATASCLICKYKVDCEAVRGDIFNQVVPRCPRCPADEPLAIMKPEIVFFGENLPEQFHRAMKYDKDEVDLLIVIGSSLKVRPVALIPSSIPHEVPQILINREPLPHLHFDVELLGDCDVIINELCHRLGGEYAKLCCNPVKLSEITEKPPRTQKELAYLSELPPTPLHVSEDSSSPERTSPPDSSVIVTLLDQAAKSNDDLDVSESKGCMEEKPQEVQTSRNVESIAEQMENPDLKNVGSSTGEKNERTSVAGTVRKCWPNRVAKEQISRRLDGNQYLFLPPNRYIFHGAEVYSDSEDDVLSSSSCGSNSDSGTCQSPSLEEPMEDESEIEEFYNGLEDEPDVPERAGGAGFGTDGDDQEAINEAISVKQEVTDMNYPSNKS

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OAD_A_5(4BVH)
SIR3_HUMAN
[Raw transfer]




OAD_A_4(1Q1A)
HST2_YEAST
[Raw transfer]




XYQ_A_5(2HJH)
SIR2_YEAST
[Raw transfer]




AR6_A_3(4BVB)
SIR3_HUMAN
[Raw transfer]




NAD_B_7(4I5I)
SIR1_HUMAN
[Raw transfer]




NAD_A_4(4I5I)
SIR1_HUMAN
[Raw transfer]




APR_A_6(4IAO)
SIR2_YEAST
[Raw transfer]




APR_A_6(4IAO)
SIR2_YEAST
[Raw transfer]




OAD_B_17(4BVG)
SIR3_HUMAN
[Raw transfer]




NAD_A_2(4BV3)
SIR3_HUMAN
[Raw transfer]




GOL_A_7(4BV3)
SIR3_HUMAN
[Raw transfer]




GOL_A_4(3U31)
SIR5_PLAF7
[Raw transfer]




GOL_A_8(4BVG)
SIR3_HUMAN
[Raw transfer]




CHAIN_H_8(4IG9)
?
[Raw transfer]

-

CHAIN_E_5(4L3O)
?
[Raw transfer]

-

CHAIN_B_2(1YC5)
NPD_THEMA
[Raw transfer]

-

4I5_B_6(4I5I)
SIR1_HUMAN
[Raw transfer]




4I5_A_3(4I5I)
SIR1_HUMAN
[Raw transfer]




NCA_A_4(1YC5)
NPD_THEMA
[Raw transfer]




OCZ_A_2(4BVB)
SIR3_HUMAN
[Raw transfer]




OCZ_A_4(4BVH)
SIR3_HUMAN
[Raw transfer]




OCZ_A_4(4BV3)
SIR3_HUMAN
[Raw transfer]




CHAIN_B_2(3GLU)
SIR3_HUMAN
[Raw transfer]

-

EDO_A_7(3ZGO)
SIR2_HUMAN
[Raw transfer]




PEG_A_15(4BVG)
SIR3_HUMAN
[Raw transfer]




NCA_A_6(2HJH)
SIR2_YEAST
[Raw transfer]




CHAIN_B_2(4FZ3)
SIR3_HUMAN
[Raw transfer]

-

CHAIN_F_6(4IG9)
?
[Raw transfer]

-

CHAIN_B_2(4IG9)
?
[Raw transfer]

-

CHAIN_F_6(4IG9)
?
[Raw transfer]

-

CHAIN_B_2(3GLR)
SIR3_HUMAN
[Raw transfer]

-

CHAIN_C_2(4C78)
SIR3_HUMAN
[Raw transfer]

-

CHAIN_D_4(4IG9)
?
[Raw transfer]

-

PIT_A_4(4HD8)
SIR3_HUMAN
[Raw transfer]




CHAIN_B_2(4BVF)
SIR3_HUMAN
[Raw transfer]

-

PGE_A_6(3ZGO)
SIR2_HUMAN
[Raw transfer]




CHAIN_B_2(4BVG)
SIR3_HUMAN
[Raw transfer]

-

CHAIN_F_2(4HD8)
SIR3_HUMAN
[Raw transfer]

-

CHAIN_B_2(3GLT)
SIR3_HUMAN
[Raw transfer]

-

CHAIN_B_2(1Q1A)
HST2_YEAST
[Raw transfer]

-

CHAIN_B_2(4BVE)
SIR3_HUMAN
[Raw transfer]

-

2 PsiBlast_PDB 96.7299%-130 - C1 -4I5I 13.2 SIR1_HUMAN
24 PsiBlast_CBE 96.6599%-130 - C1 -4I5I 13.1 SIR1_HUMAN
23 PsiBlast_CBE 96.4199%-132 - C1 -4IG9 6.7 ?
22 PsiBlast_CBE 95.9299%-130 - C1 -4IG9 6.2 ?
21 PsiBlast_CBE 95.5899%-134 - C1 -4IG9 8.0 ?
28 Fugue 88.9132% -74 - C1 -4IAO 10.6 SIR2_YEAST
4 PsiBlast_PDB 79.1240%-114 - C1 -2HJH 11.2 SIR2_YEAST
10 PsiBlast_PDB 75.3840%-114 - C1 -4BVB 10.1 SIR3_HUMAN
14 PsiBlast_PDB 74.8340%-106 - C1 -4BVH 11.1 SIR3_HUMAN
44 HHSearch 74.2739%-105 - C1 -1Q1A 11.9 HST2_YEAST
11 PsiBlast_PDB 74.0240%-112 - C1 -4BVE 14.9 SIR3_HUMAN
9 PsiBlast_PDB 73.6640%-109 - C1 -4BV3 9.2 SIR3_HUMAN
19 PsiBlast_PDB 73.2940%-107 - C1 -3GLT 14.4 SIR3_HUMAN
17 PsiBlast_PDB 73.2940%-114 - C1 -3GLR 8.3 SIR3_HUMAN
8 PsiBlast_PDB 73.1640%-114 - C1 -4HD8 7.3 SIR3_HUMAN
15 PsiBlast_PDB 73.1340%-113 - C1 -4C78 7.4 SIR3_HUMAN
13 PsiBlast_PDB 72.9440%-110 - C1 -4BVG 11.2 SIR3_HUMAN
16 PsiBlast_PDB 72.6940%-112 - C1 -4FZ3 7.2 SIR3_HUMAN
12 PsiBlast_PDB 72.0640%-107 - C1 -4BVF 13.8 SIR3_HUMAN
20 PsiBlast_PDB 71.8340%-112 - C1 -3GLU 4.6 SIR3_HUMAN
7 PsiBlast_PDB 66.3542% -91 - C1 -3ZGO 2.9 SIR2_HUMAN
6 PsiBlast_PDB 65.6543% -92 - C1 -4L3O 10.0 ?
45 HHSearch 65.4534%-108 - C1 -1YC5 7.1 NPD_THEMA