@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF02146_SIR2_Y: (2014-09-28 )
MTIPHMKYAVSKTSENKVSNTVSPTQDKDAIRKQPDDIINNDEPSHKKIKVAQPDSLRETNTTDPLGHTKAALGEVASMELKPTNDMDPLAVSAASVVSMSNDVLKPETPKGPIIISKNPSNGIFYGPSFTKRESLNARMFLKYYGAHKFLDTYLPEDLNSLYIYYLIKLLGFEVKDQALIGTINSIVHINSQERVQDLGSAISVTNVEDPLAKKQTVRLIKDLQRAINKVLCTRLRLSNFFTIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVFNYNIFMHDPSVFYNIANMVLPPEKIYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRNLELPLCPYCYKKRREYFPEGYNNKVGVAASQGSMSERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKHAEFDLSLLGYCDDIAAMVAQKCGWTIPHKKWNDLKNKNFKCQEKDKGVYVVTSDEHPKTL

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OAD_A_4(1Q1A)
HST2_YEAST
[Raw transfer]




OAD_A_5(4BVH)
SIR3_HUMAN
[Raw transfer]




XYQ_A_5(2HJH)
SIR2_YEAST
[Raw transfer]




XYQ_A_5(2HJH)
SIR2_YEAST
[Raw transfer]




OAD_B_17(4BVG)
SIR3_HUMAN
[Raw transfer]




NAD_A_4(4I5I)
SIR1_HUMAN
[Raw transfer]




NAD_A_2(4BV3)
SIR3_HUMAN
[Raw transfer]




AR6_A_3(4BVB)
SIR3_HUMAN
[Raw transfer]




APR_A_6(4IAO)
SIR2_YEAST
[Raw transfer]




APR_A_6(4IAO)
SIR2_YEAST
[Raw transfer]




GOL_A_7(4BV3)
SIR3_HUMAN
[Raw transfer]




1NQ_A_3(4JSR)
SIR3_HUMAN
[Raw transfer]




GOL_A_4(3U31)
SIR5_PLAF7
[Raw transfer]




GOL_A_8(4BVG)
SIR3_HUMAN
[Raw transfer]




1NS_A_3(4JT9)
SIR3_HUMAN
[Raw transfer]




GOL_A_4(4JT9)
SIR3_HUMAN
[Raw transfer]




1NR_A_3(4JT8)
SIR3_HUMAN
[Raw transfer]




GOL_A_6(4C7B)
SIR3_HUMAN
[Raw transfer]




BVB_A_4(4C7B)
SIR3_HUMAN
[Raw transfer]




OCZ_A_4(4BVH)
SIR3_HUMAN
[Raw transfer]




OCZ_A_2(4BVB)
SIR3_HUMAN
[Raw transfer]




NCA_A_4(1YC5)
NPD_THEMA
[Raw transfer]




OCZ_A_4(4BV3)
SIR3_HUMAN
[Raw transfer]




4I5_A_3(4I5I)
SIR1_HUMAN
[Raw transfer]




NCA_A_6(2HJH)
SIR2_YEAST
[Raw transfer]




EDO_A_7(3ZGO)
SIR2_HUMAN
[Raw transfer]




CHAIN_F_2(4HD8)
SIR3_HUMAN
[Raw transfer]

-

CHAIN_B_2(1YC5)
NPD_THEMA
[Raw transfer]

-

CHAIN_B_2(3GLU)
SIR3_HUMAN
[Raw transfer]

-

PGE_A_6(3ZGO)
SIR2_HUMAN
[Raw transfer]




PEG_A_15(4BVG)
SIR3_HUMAN
[Raw transfer]




CHAIN_B_2(3GLR)
SIR3_HUMAN
[Raw transfer]

-

CHAIN_B_2(4C7B)
SIR3_HUMAN
[Raw transfer]

-

CHAIN_C_2(4C78)
SIR3_HUMAN
[Raw transfer]

-

CHAIN_B_2(4BVF)
SIR3_HUMAN
[Raw transfer]

-

CHAIN_B_2(4BVG)
SIR3_HUMAN
[Raw transfer]

-

CHAIN_B_2(3GLT)
SIR3_HUMAN
[Raw transfer]

-

CHAIN_B_2(4BVE)
SIR3_HUMAN
[Raw transfer]

-

29 HHSearch 100.00100%-128 - C2 -4IAO 10.7 SIR2_YEAST
30 HHSearch 83.68100%-121 - C2 -2HJH 10.5 SIR2_YEAST
31 HHSearch 60.7134%-117 - C2 -3ZGO 2.9 SIR2_HUMAN
3 PsiBlast_PDB 60.0440%-113 - C2 -4I5I 12.9 SIR1_HUMAN
34 HHSearch 57.6835%-110 - C2 -1Q1A 12.5 HST2_YEAST
7 PsiBlast_PDB 56.4135%-108 - C2 -4BVB 10.1 SIR3_HUMAN
17 PsiBlast_PDB 56.2435%-108 - C2 -3GLU 4.4 SIR3_HUMAN
14 PsiBlast_PDB 55.9835%-112 - C2 -3GLR 6.8 SIR3_HUMAN
11 PsiBlast_PDB 55.9835%-104 - C2 -4BVH 11.3 SIR3_HUMAN
6 PsiBlast_PDB 55.8235%-106 - C2 -4BV3 9.5 SIR3_HUMAN
10 PsiBlast_PDB 55.5835%-106 - C2 -4BVG 11.4 SIR3_HUMAN
8 PsiBlast_PDB 55.5435%-110 - C2 -4BVE 14.7 SIR3_HUMAN
18 PsiBlast_PDB 55.4435%-105 - C2 -4JSR 9.2 SIR3_HUMAN
19 PsiBlast_PDB 55.0335%-105 - C2 -4JT8 8.4 SIR3_HUMAN
20 PsiBlast_PDB 54.8235%-106 - C2 -4JT9 7.3 SIR3_HUMAN
16 PsiBlast_PDB 54.8135%-107 - C2 -3GLT 14.2 SIR3_HUMAN
9 PsiBlast_PDB 54.6635%-107 - C2 -4BVF 14.0 SIR3_HUMAN
12 PsiBlast_PDB 54.2135%-106 - C2 -4C78 7.7 SIR3_HUMAN
13 PsiBlast_PDB 53.1635%-109 - C2 -4C7B 7.0 SIR3_HUMAN
5 PsiBlast_PDB 52.6335%-109 - C2 -4HD8 7.0 SIR3_HUMAN
36 HHSearch 51.3331%-121 * C2 *1YC5 6.9 NPD_THEMA