@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF02196_ARAF_H: (2014-09-29 )
MEPPRGPPANGAEPSRAVGTVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYRLIKGRKTVTAWDTAIAPLDGEELIVEVLEDVPLTMHNFVRKTFFSLAFCDFCLKFLFHGFRCQTCGYKFHQHCSSKVPTVCVDMSTNRQQFYHSVQDLSGGSRQHEAPSNRPLNELLTPQGPSPRTQHCDPEHFPFPAPANAPLQRIRSTSTPNVHMVSTTAPMDSNLIQLTGQSFSTDAAGSRGGSDGTPRGSPSPASVSSGRKSPHSKSPAEQRERKSLADDKKKVKNLGYRDSGYYWEVPPSEVQLLKRIGTGSFGTVFRGRWHGDVAVKVLKVSQPTAEQAQAFKNEMQVLRKTRHVNILLFMGFMTRPGFAIITQWCEGSSLYHHLHVADTRFDMVQLIDVARQTAQGMDYLHAKNIIHRDLKSNNIFLHEGLTVKIGDFGLATVKTRWSGAQPLEQPSGSVLWMAAEVIRMQDPNPYSFQSDVYAYGVVLYELMTGSLPYSHIGCRDQIIFMVGRGYLSPDLSKISSNCPKAMRRLLSDCLKFQREERPLFPQILATIELLQRSLPKIERSASEPSLHRTQADELPACLLSAARLVP

Atome Classification :

(57 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

B0R_A_3(3TV6)
BRAF_HUMAN
[Raw transfer]




RI9_A_3(4EHG)
BRAF_HUMAN
[Raw transfer]




TV4_A_3(3TV4)
BRAF_HUMAN
[Raw transfer]




RI9_B_4(4EHG)

[Raw transfer]




0WP_B_4(4G9C)

[Raw transfer]




B0R_B_4(3TV6)

[Raw transfer]




TV4_B_4(3TV4)

[Raw transfer]




BR2_A_3(3SKC)
BRAF_HUMAN
[Raw transfer]




RI8_B_4(4EHE)

[Raw transfer]




BR2_B_4(3SKC)

[Raw transfer]




RI8_A_3(4EHE)
BRAF_HUMAN
[Raw transfer]




T1Q_B_4(4E4X)

[Raw transfer]




T1Q_A_3(4E4X)
BRAF_HUMAN
[Raw transfer]




DFS_B_4(4MBJ)

[Raw transfer]




0WP_A_3(4G9C)
BRAF_HUMAN
[Raw transfer]




L1E_A_4(3IDP)
BRAF_HUMAN
[Raw transfer]




L1E_B_3(3IDP)

[Raw transfer]




032_A_3(3OG7)
BRAF_HUMAN
[Raw transfer]




032_A_3(3OG7)
BRAF_HUMAN
[Raw transfer]




BAX_B_4(1UWH)

[Raw transfer]




1SU_A_3(4KSP)
BRAF_HUMAN
[Raw transfer]




FNI_A_3(3PPK)
BRAF_HUMAN
[Raw transfer]




BAX_A_3(1UWH)
BRAF_HUMAN
[Raw transfer]




324_A_3(3C4C)
BRAF_HUMAN
[Raw transfer]




FNI_B_4(3PPK)

[Raw transfer]




STI_A_4(1T46)

[Raw transfer]




DFS_A_3(4MBJ)
BRAF_HUMAN
[Raw transfer]




324_B_4(3C4C)

[Raw transfer]




BAX_B_4(1UWJ)

[Raw transfer]




B1E_A_3(4G9R)
BRAF_HUMAN
[Raw transfer]




BAX_A_3(1UWJ)
BRAF_HUMAN
[Raw transfer]




SM6_A_3(3PSB)
BRAF_HUMAN
[Raw transfer]




B1E_B_4(4G9R)

[Raw transfer]




B96_B_5(4JVG)
BRAF_HUMAN
[Raw transfer]




FP4_B_4(3PRI)

[Raw transfer]




SM5_B_4(3D4Q)

[Raw transfer]




SM5_A_3(3D4Q)
BRAF_HUMAN
[Raw transfer]




B96_C_7(4JVG)
BRAF_HUMAN
[Raw transfer]




B96_A_6(4JVG)
BRAF_HUMAN
[Raw transfer]




SM7_A_3(3PSD)
BRAF_HUMAN
[Raw transfer]




10Z_A_4(4H58)
BRAF_HUMAN
[Raw transfer]




B96_D_8(4JVG)

[Raw transfer]




SM6_B_4(3PSB)

[Raw transfer]




SM7_B_4(3PSD)

[Raw transfer]




FOI_B_4(3PPJ)

[Raw transfer]




831_A_3(3II5)
BRAF_HUMAN
[Raw transfer]




FP4_A_3(3PRI)
BRAF_HUMAN
[Raw transfer]




FOI_A_3(3PPJ)
BRAF_HUMAN
[Raw transfer]




FP3_B_4(3PRF)

[Raw transfer]




831_B_6(3II5)

[Raw transfer]




SM5_B_4(3OMV)

[Raw transfer]




SM5_A_3(3OMV)
RAF1_HUMAN
[Raw transfer]




FP3_A_3(3PRF)
BRAF_HUMAN
[Raw transfer]




734_A_3(4E26)
BRAF_HUMAN
[Raw transfer]




5CN_B_2(2I1M)

[Raw transfer]




734_B_4(4E26)

[Raw transfer]




RSW_A_3(3Q4C)
BRAF_HUMAN
[Raw transfer]




42 PsiBlast_CBE 92.6575%-129 - C2 -4KSP 9.8 BRAF_HUMAN
21 PsiBlast_CBE 92.3876%-133 - C2 -3OMV 6.5
1 PsiBlast_PDB 92.2776%-129 - C2 -3OMV 4.4 RAF1_HUMAN
41 PsiBlast_CBE 92.0474%-132 - C2 -4MBJ 5.1 BRAF_HUMAN
45 PsiBlast_CBE 91.9576%-131 - C2 -4H58 7.5 BRAF_HUMAN
13 PsiBlast_PDB 91.4274%-123 - C2 -4E26 5.1 BRAF_HUMAN
8 PsiBlast_PDB 91.1574%-129 - C2 -3Q4C 7.9 BRAF_HUMAN
11 PsiBlast_PDB 90.9674%-129 - C2 -3TV4 7.8 BRAF_HUMAN
12 PsiBlast_PDB 90.8574%-128 - C2 -3TV6 8.4 BRAF_HUMAN
14 PsiBlast_PDB 90.7574%-131 - C2 -4E4X 9.9 BRAF_HUMAN
15 PsiBlast_PDB 90.5874%-125 - C2 -4G9C 9.7 BRAF_HUMAN
37 PsiBlast_CBE 90.5074%-125 - C2 -3IDP 10.7
23 PsiBlast_CBE 90.2274%-121 - C2 -4EHE 8.2
10 PsiBlast_PDB 90.2174%-128 - C2 -3SKC 8.6 BRAF_HUMAN
18 PsiBlast_PDB 90.1074%-127 - C2 -3IDP 10.8 BRAF_HUMAN
35 PsiBlast_CBE 90.0674%-125 - C2 -3D4Q 6.6
6 PsiBlast_PDB 90.0374%-129 - C2 -3PRF 8.3 BRAF_HUMAN
5 PsiBlast_PDB 89.9974%-130 - C2 -3PPK 9.0 BRAF_HUMAN
22 PsiBlast_CBE 89.9174%-127 - C2 -4G9C 9.9
9 PsiBlast_PDB 89.8974%-128 - C2 -3PSD 8.3 BRAF_HUMAN
39 PsiBlast_CBE 89.8873%-129 - C2 -4EHG 8.7
16 PsiBlast_PDB 89.7474%-127 - C2 -4EHE 8.0 BRAF_HUMAN
25 PsiBlast_CBE 89.7074%-125 - C2 -4E26 3.7
44 PsiBlast_CBE 89.5176%-128 - C2 -1UWH 9.1 BRAF_HUMAN
36 PsiBlast_CBE 89.4974%-131 - C2 -3II5 10.1
27 PsiBlast_CBE 89.4974%-123 - C2 -3TV4 7.8
3 PsiBlast_PDB 89.4674%-126 - C2 -3PSB 7.5 BRAF_HUMAN
26 PsiBlast_CBE 89.3374%-124 - C2 -3TV6 8.6
17 PsiBlast_PDB 89.3374%-124 - C2 -3II5 10.4 BRAF_HUMAN
2 PsiBlast_PDB 89.1574%-124 - C2 -3D4Q 7.2 BRAF_HUMAN
33 PsiBlast_CBE 88.9774%-127 - C2 -3PPK 8.4
32 PsiBlast_CBE 88.8274%-126 - C2 -3PRF 7.3
29 PsiBlast_CBE 88.7674%-124 - C2 -3PSD 8.2
40 PsiBlast_CBE 88.6774%-122 - C2 -4MBJ 7.1
50 PsiBlast_CBE 88.3272%-127 - C2 -4JVG 9.1 BRAF_HUMAN
34 PsiBlast_CBE 88.2574%-125 - C2 -3PPJ 7.4
30 PsiBlast_CBE 88.2374%-125 - C2 -3PSB 7.7
43 PsiBlast_CBE 88.1976%-127 - C2 -1UWH 9.0
28 PsiBlast_CBE 88.1574%-118 - C2 -3SKC 9.3
52 PsiBlast_CBE 88.1072%-127 - C2 -3C4C 6.1
4 PsiBlast_PDB 87.9474%-125 - C2 -3PPJ 7.6 BRAF_HUMAN
66 HHSearch 87.9272%-131 - C2 -3OG7 9.8 BRAF_HUMAN
20 PsiBlast_PDB 87.7873%-126 - C2 -4EHG 7.7 BRAF_HUMAN
24 PsiBlast_CBE 87.7574%-122 - C2 -4E4X 9.5
31 PsiBlast_CBE 87.5674%-124 - C2 -3PRI 7.7
7 PsiBlast_PDB 87.5374%-124 - C2 -3PRI 7.5 BRAF_HUMAN
38 PsiBlast_CBE 87.5073%-121 - C2 -4G9R 10.9
48 PsiBlast_CBE 87.4772%-123 - C2 -4JVG 8.6
46 PsiBlast_CBE 87.3576%-119 - C2 -1UWJ 8.8
51 PsiBlast_CBE 87.1072%-124 - C2 -4JVG 8.4 BRAF_HUMAN
47 PsiBlast_CBE 86.6976%-121 - C2 -1UWJ 9.5 BRAF_HUMAN
49 PsiBlast_CBE 86.6472%-123 - C2 -4JVG 8.4 BRAF_HUMAN
53 PsiBlast_CBE 85.3972%-119 - C2 -3C4C 8.1 BRAF_HUMAN
19 PsiBlast_PDB 84.9673%-121 - C2 -4G9R 10.8 BRAF_HUMAN
71 HHSearch 70.1634%-106 - C2 -1T46 8.4
86 HHSearch 66.4631%-101 - C2 -2IVS - RET_HUMAN
85 HHSearch 62.0432%-102 - C2 -2I1M 4.3