@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF02196_RAF1_H: (2014-09-29 )
MEHIQGAWKTISNGFGFKDAVFDGSSCISPTIVQQFGYQRRASDDGKLTDPSKTSNTIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLHEHKGKKARLDWNTDAASLIGEELQVDFLDHVPLTTHNFARKTFLKLAFCDICQKFLLNGFRCQTCGYKFHEHCSTKVPTMCVDWSNIRQLLLFPNSTIGDSGVPALPSLTMRRMRESVSRMPVSSQHRYSTPHAFTFNTSSPSSEGSLSQRQRSTSTPNVHMVSTTLPVDSRMIEDAIRSHSESASPSALSSSPNNLSPTGWSQPKTPVPAQRERAPVSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF

Atome Classification :

(54 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

B0R_A_3(3TV6)
BRAF_HUMAN
[Raw transfer]




RI9_A_3(4EHG)
BRAF_HUMAN
[Raw transfer]




BR2_B_4(3SKC)

[Raw transfer]




BR2_A_3(3SKC)
BRAF_HUMAN
[Raw transfer]




RI9_B_4(4EHG)

[Raw transfer]




TV4_A_3(3TV4)
BRAF_HUMAN
[Raw transfer]




T1Q_A_3(4E4X)
BRAF_HUMAN
[Raw transfer]




T1Q_B_4(4E4X)

[Raw transfer]




RI8_A_3(4EHE)
BRAF_HUMAN
[Raw transfer]




DFS_B_4(4MBJ)

[Raw transfer]




TV4_B_4(3TV4)

[Raw transfer]




0WP_B_4(4G9C)

[Raw transfer]




B0R_B_4(3TV6)

[Raw transfer]




RI8_B_4(4EHE)

[Raw transfer]




L1E_B_3(3IDP)

[Raw transfer]




L1E_A_4(3IDP)
BRAF_HUMAN
[Raw transfer]




0WP_A_3(4G9C)
BRAF_HUMAN
[Raw transfer]




032_A_3(3OG7)
BRAF_HUMAN
[Raw transfer]




FNI_A_3(3PPK)
BRAF_HUMAN
[Raw transfer]




1SU_A_3(4KSP)
BRAF_HUMAN
[Raw transfer]




324_A_3(3C4C)
BRAF_HUMAN
[Raw transfer]




FNI_B_4(3PPK)

[Raw transfer]




BAX_A_3(1UWH)
BRAF_HUMAN
[Raw transfer]




DFS_A_3(4MBJ)
BRAF_HUMAN
[Raw transfer]




SM6_A_3(3PSB)
BRAF_HUMAN
[Raw transfer]




BAX_B_4(1UWH)

[Raw transfer]




FP4_B_4(3PRI)

[Raw transfer]




SM5_B_4(3D4Q)

[Raw transfer]




B1E_B_4(4G9R)

[Raw transfer]




B96_C_7(4JVG)
BRAF_HUMAN
[Raw transfer]




10Z_A_4(4H58)
BRAF_HUMAN
[Raw transfer]




B96_B_5(4JVG)
BRAF_HUMAN
[Raw transfer]




BAX_A_3(1UWJ)
BRAF_HUMAN
[Raw transfer]




BAX_B_4(1UWJ)

[Raw transfer]




SM5_B_4(3OMV)

[Raw transfer]




FP4_A_3(3PRI)
BRAF_HUMAN
[Raw transfer]




SM5_A_3(3D4Q)
BRAF_HUMAN
[Raw transfer]




B1E_A_3(4G9R)
BRAF_HUMAN
[Raw transfer]




SM7_A_3(3PSD)
BRAF_HUMAN
[Raw transfer]




SM5_A_3(3OMV)
RAF1_HUMAN
[Raw transfer]




SM7_B_4(3PSD)

[Raw transfer]




B96_D_8(4JVG)

[Raw transfer]




FP3_A_3(3PRF)
BRAF_HUMAN
[Raw transfer]




SM6_B_4(3PSB)

[Raw transfer]




B96_A_6(4JVG)
BRAF_HUMAN
[Raw transfer]




324_B_4(3C4C)

[Raw transfer]




FOI_B_4(3PPJ)

[Raw transfer]




FP3_B_4(3PRF)

[Raw transfer]




FOI_A_3(3PPJ)
BRAF_HUMAN
[Raw transfer]




831_A_3(3II5)
BRAF_HUMAN
[Raw transfer]




831_B_6(3II5)

[Raw transfer]




734_A_3(4E26)
BRAF_HUMAN
[Raw transfer]




734_B_4(4E26)

[Raw transfer]




RSW_A_3(3Q4C)
BRAF_HUMAN
[Raw transfer]




21 PsiBlast_CBE 94.10100%-119 - C2 -3OMV 6.1
1 PsiBlast_PDB 92.89100%-118 - C2 -3OMV 4.8 RAF1_HUMAN
23 PsiBlast_CBE 90.3977%-107 - C2 -4EHE 8.2
42 PsiBlast_CBE 90.2680%-110 - C2 -4KSP 9.6 BRAF_HUMAN
14 PsiBlast_PDB 89.8677%-116 - C2 -4E4X 9.9 BRAF_HUMAN
13 PsiBlast_PDB 89.4077%-107 - C2 -4E26 5.1 BRAF_HUMAN
8 PsiBlast_PDB 89.3377%-111 - C2 -3Q4C 7.4 BRAF_HUMAN
20 PsiBlast_PDB 89.3077%-115 - C2 -4MBJ 5.2 BRAF_HUMAN
43 PsiBlast_CBE 89.1980%-114 - C2 -4H58 7.0 BRAF_HUMAN
12 PsiBlast_PDB 89.1177%-111 - C2 -3TV6 8.4 BRAF_HUMAN
35 PsiBlast_CBE 88.8977%-108 - C2 -3D4Q 6.6
39 PsiBlast_CBE 88.5977%-108 - C2 -4MBJ 7.1
22 PsiBlast_CBE 88.5777%-111 - C2 -4G9C 9.9
6 PsiBlast_PDB 88.1577%-111 - C2 -3PRF 8.2 BRAF_HUMAN
40 PsiBlast_CBE 88.0477%-107 - C2 -3IDP 10.7
26 PsiBlast_CBE 87.9577%-106 - C2 -3TV6 8.7
29 PsiBlast_CBE 87.8677%-107 - C2 -3PSD 8.1
5 PsiBlast_PDB 87.7777%-113 - C2 -3PPK 9.0 BRAF_HUMAN
16 PsiBlast_PDB 87.5877%-112 - C2 -4EHE 8.0 BRAF_HUMAN
11 PsiBlast_PDB 87.5477%-111 - C2 -3TV4 7.7 BRAF_HUMAN
28 PsiBlast_CBE 87.5277%-105 - C2 -3SKC 9.1
2 PsiBlast_PDB 87.4577%-108 - C2 -3D4Q 7.0 BRAF_HUMAN
15 PsiBlast_PDB 87.4377%-109 - C2 -4G9C 9.5 BRAF_HUMAN
33 PsiBlast_CBE 87.1777%-107 - C2 -3PPK 8.4
34 PsiBlast_CBE 87.1677%-108 - C2 -3PPJ 7.4
3 PsiBlast_PDB 87.0277%-109 - C2 -3PSB 7.6 BRAF_HUMAN
9 PsiBlast_PDB 87.0077%-110 - C2 -3PSD 8.1 BRAF_HUMAN
52 PsiBlast_CBE 86.9276%-108 - C2 -3C4C 6.1
4 PsiBlast_PDB 86.6677%-108 - C2 -3PPJ 7.6 BRAF_HUMAN
24 PsiBlast_CBE 86.6577%-106 - C2 -4E4X 9.5
36 PsiBlast_CBE 86.5777%-110 - C2 -3II5 10.1
25 PsiBlast_CBE 86.4677%-108 - C2 -4E26 4.1
41 PsiBlast_CBE 86.3477%-108 - C2 -3IDP 10.8 BRAF_HUMAN
10 PsiBlast_PDB 86.2877%-113 - C2 -3SKC 8.6 BRAF_HUMAN
27 PsiBlast_CBE 85.9477%-106 - C2 -3TV4 7.8
38 PsiBlast_CBE 85.9177%-109 - C2 -4EHG 8.7
32 PsiBlast_CBE 85.8277%-109 - C2 -3PRF 7.3
50 PsiBlast_CBE 85.7276%-109 - C2 -4JVG 9.1 BRAF_HUMAN
48 PsiBlast_CBE 85.6076%-106 - C2 -4JVG 8.6
30 PsiBlast_CBE 85.3377%-106 - C2 -3PSB 7.7
45 PsiBlast_CBE 84.9380%-111 - C2 -1UWH 9.1 BRAF_HUMAN
19 PsiBlast_PDB 84.9377%-111 - C2 -4EHG 7.7 BRAF_HUMAN
31 PsiBlast_CBE 84.8077%-108 - C2 -3PRI 7.6
17 PsiBlast_PDB 84.6877%-104 - C2 -3II5 10.4 BRAF_HUMAN
51 PsiBlast_CBE 84.6576%-109 - C2 -4JVG 8.4 BRAF_HUMAN
49 PsiBlast_CBE 84.6476%-106 - C2 -4JVG 8.4 BRAF_HUMAN
37 PsiBlast_CBE 84.3777%-103 - C2 -4G9R 10.9
44 PsiBlast_CBE 84.3280%-111 - C2 -1UWH 9.0
46 PsiBlast_CBE 83.9380% -99 - C2 -1UWJ 8.8
7 PsiBlast_PDB 83.5177%-108 - C2 -3PRI 7.5 BRAF_HUMAN
54 PsiBlast_CBE 83.1575%-113 - C2 -3OG7 9.6 BRAF_HUMAN
53 PsiBlast_CBE 82.8776% -99 - C2 -3C4C 8.2 BRAF_HUMAN
18 PsiBlast_PDB 82.6377%-105 - C2 -4G9R 10.8 BRAF_HUMAN
47 PsiBlast_CBE 82.5080%-101 - C2 -1UWJ 9.3 BRAF_HUMAN