@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF02375_KDM4A_: (2014-09-29 )
MASESETLNPSARIMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYDDIDDLVIPAPIQQLVTGQSGLFTQYNIQKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWKNLTFNPPIYGADVNGTLYEKHVDEWNIGRLRTILDLVEKESGITIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAESTNFATRRWIEYGKQAVLCSCRKDMVKISMDVFVRKFQPERYKLWKAGKDNTVIDHTLPTPEAAEFLKESELPPRAGNEEECPEEDMEGVEDGEEGDLKTSLAKHRIGTKRHRVCLEIPQEVSQSELFPKEDLSSEQYEMTECPAALAPVRPTHSSVRQVEDGLTFPDYSDSTEVKFEELKNVKLEEEDEEEEQAAAALDLSVNPASVGGRLVFSGSKKKSSSSLGSGSSRDSISSDSETSEPLSCRAQGQTGVLTVHSYAKGDGRVTVGEPCTRKKGSAARSFSERELAEVADEYMFSLEENKKSKGRRQPLSKLPRHHPLVLQECVSDDETSEQLTPEEEAEETEAWAKPLSQLWQNRPPNFEAEKEFNETMAQQAPHCAVCMIFQTYHQVEFGGFNQNCGNASDLAPQKQRTKPLIPEMCFTSTGCSTDINLSTPYLEEDGTSILVSCKKCSVRVHASCYGVPPAKASEDWMCSRCSANALEEDCCLCSLRGGALQRANDDRWVHVSCAVAILEARFVNIAERSPVDVSKIPLPRFKLKCIFCKKRRKRTAGCCVQCSHGRCPTAFHVSCAQAAGVMMQPDDWPFVVFITCFRHKIPNLERAKGALQSITAGQKVISKHKNGRFYQCEVVRLTTETFYEVNFDDGSFSDNLYPEDIVSQDCLQFGPPAEGEVVQVRWTDGQVYGAKFVASHPIQMYQVEFEDGSQLVVKRDDVYTLDEELPKRVKSRLSVASDMRFNEIFTEKEVKQEKKRQRVINSRYREDYIEPALYRAIME

Atome Classification :

(49 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

Y28_B_8(2WWJ)
KDM4A_HUMAN
[Raw transfer]



OGA_A_9(2PXJ)
KDM4A_HUMAN
[Raw transfer]



OGA_B_10(2PXJ)
KDM4A_HUMAN
[Raw transfer]



OGA_A_9(2OS2)
KDM4A_HUMAN
[Raw transfer]



OGA_B_10(2OS2)
KDM4A_HUMAN
[Raw transfer]



OGA_A_10(2OX0)
KDM4A_HUMAN
[Raw transfer]



OGA_B_10(2P5B)
KDM4A_HUMAN
[Raw transfer]



OGA_A_9(2Q8E)
KDM4A_HUMAN
[Raw transfer]



HQ2_B_9(3RVH)
KDM4A_HUMAN
[Raw transfer]



OGA_A_10(2OX0)
KDM4A_HUMAN
[Raw transfer]



2HG_B_9(2YBK)
KDM4A_HUMAN
[Raw transfer]



OGA_B_10(2OQ6)
KDM4A_HUMAN
[Raw transfer]



OGA_A_9(2P5B)
KDM4A_HUMAN
[Raw transfer]



OGA_A_9(2OQ6)
KDM4A_HUMAN
[Raw transfer]



OGA_B_10(2Q8E)
KDM4A_HUMAN
[Raw transfer]



OGA_B_8(2OQ7)
KDM4A_HUMAN
[Raw transfer]



OGA_B_11(2OX0)
KDM4A_HUMAN
[Raw transfer]



2HG_A_6(2YBK)
KDM4A_HUMAN
[Raw transfer]



OGA_A_9(2OT7)
KDM4A_HUMAN
[Raw transfer]



HQ2_A_5(3RVH)
KDM4A_HUMAN
[Raw transfer]



AKG_B_8(2GP5)
KDM4A_HUMAN
[Raw transfer]



OGA_B_10(2OT7)
KDM4A_HUMAN
[Raw transfer]



AKG_A_5(2GP5)
KDM4A_HUMAN
[Raw transfer]



AKG_A_9(2Q8C)
KDM4A_HUMAN
[Raw transfer]



2HG_B_11(2YBP)
KDM4A_HUMAN
[Raw transfer]



OGA_A_3(2XML)
KDM4C_HUMAN
[Raw transfer]



AKG_B_10(2Q8C)
KDM4A_HUMAN
[Raw transfer]



8HQ_B_11(4BIS)
?
[Raw transfer]



KC6_A_5(3PDQ)
KDM4A_HUMAN
[Raw transfer]



OGA_B_10(2XML)
KDM4C_HUMAN
[Raw transfer]



Y28_A_7(2WWJ)
KDM4A_HUMAN
[Raw transfer]



S2G_A_8(2YBS)
KDM4A_HUMAN
[Raw transfer]



0WS_B_12(4GD4)
KDM4A_HUMAN
[Raw transfer]



08P_B_10(3U4S)
KDM4A_HUMAN
[Raw transfer]



8HQ_A_6(4BIS)
?
[Raw transfer]



KC6_B_13(3PDQ)
KDM4A_HUMAN
[Raw transfer]



DZA_B_11(4AI9)
KDM4A_HUMAN
[Raw transfer]



SIN_B_10(2Q8D)
KDM4A_HUMAN
[Raw transfer]



PD2_B_8(2VD7)
KDM4A_HUMAN
[Raw transfer]



PD2_A_5(2VD7)
KDM4A_HUMAN
[Raw transfer]



2HG_A_8(2YBP)
KDM4A_HUMAN
[Raw transfer]



SIN_A_9(2Q8D)
KDM4A_HUMAN
[Raw transfer]



8XQ_A_5(3NJY)
KDM4A_HUMAN
[Raw transfer]



DZA_A_7(4AI9)
KDM4A_HUMAN
[Raw transfer]



8XQ_B_8(3NJY)
KDM4A_HUMAN
[Raw transfer]



0WS_A_6(4GD4)
KDM4A_HUMAN
[Raw transfer]



OGA_A_4(4IGQ)
?
[Raw transfer]



S2G_B_11(2YBS)
KDM4A_HUMAN
[Raw transfer]



AKG_A_2(3OPT)
RPH1_YEAST
[Raw transfer]



CHAIN_D_4(3U4S)
KDM4A_HUMAN
[Raw transfer]
-
OXY_B_13(2P5B)
KDM4A_HUMAN
[Raw transfer]



OXY_A_11(2P5B)
KDM4A_HUMAN
[Raw transfer]



CHAIN_J_4(2PXJ)
KDM4A_HUMAN
[Raw transfer]
-
CHAIN_D_4(2OS2)
KDM4A_HUMAN
[Raw transfer]
-
CHAIN_F_3(2Q8D)
KDM4A_HUMAN
[Raw transfer]
-
CHAIN_F_3(2Q8E)
KDM4A_HUMAN
[Raw transfer]
-
CHAIN_I_3(2PXJ)
KDM4A_HUMAN
[Raw transfer]
-
CHAIN_G_4(2Q8D)
KDM4A_HUMAN
[Raw transfer]
-
CHAIN_G_4(2Q8E)
KDM4A_HUMAN
[Raw transfer]
-
CHAIN_D_4(2OT7)
KDM4A_HUMAN
[Raw transfer]
-
CHAIN_G_4(2Q8C)
KDM4A_HUMAN
[Raw transfer]
-
CHAIN_C_3(2OT7)
KDM4A_HUMAN
[Raw transfer]
-
CHAIN_C_3(2OQ6)
KDM4A_HUMAN
[Raw transfer]
-
CHAIN_F_3(2Q8C)
KDM4A_HUMAN
[Raw transfer]
-
CHAIN_D_4(2OQ6)
KDM4A_HUMAN
[Raw transfer]
-
CHAIN_C_3(2OX0)
KDM4A_HUMAN
[Raw transfer]
-
CHAIN_D_4(2OX0)
KDM4A_HUMAN
[Raw transfer]
-
CHAIN_D_4(2YBS)
KDM4A_HUMAN
[Raw transfer]
-
CHAIN_C_3(2OS2)
KDM4A_HUMAN
[Raw transfer]
-
CHAIN_D_4(2YBP)
KDM4A_HUMAN
[Raw transfer]
-
CHAIN_I_3(2P5B)
KDM4A_HUMAN
[Raw transfer]
-
CHAIN_I_3(2P5B)
KDM4A_HUMAN
[Raw transfer]
-
CHAIN_C_3(2YBP)
KDM4A_HUMAN
[Raw transfer]
-
CHAIN_C_3(2YBS)
KDM4A_HUMAN
[Raw transfer]
-
29 PsiBlast_CBE 97.78100% -77 - C5 -2YBP 10.2 KDM4A_HUMAN
9 PsiBlast_PDB 97.58100% -83 - C5 -2YBS 9.3 KDM4A_HUMAN
10 PsiBlast_PDB 97.57100% -79 - C5 -3PDQ 3.8 KDM4A_HUMAN
11 PsiBlast_PDB 97.50100% -81 - C5 -2YBK 3.8 KDM4A_HUMAN
30 PsiBlast_CBE 97.46100% -79 - C5 -2YBK 3.7 KDM4A_HUMAN
25 PsiBlast_CBE 97.25100% -80 - C5 -3RVH 5.0 KDM4A_HUMAN
14 PsiBlast_PDB 97.14100% -79 - C5 -4GD4 3.8 KDM4A_HUMAN
21 PsiBlast_CBE 97.06100% -82 - C5 -4GD4 3.6 KDM4A_HUMAN
22 PsiBlast_CBE 97.05100% -83 - C5 -4BIS 4.0 ?
3 PsiBlast_PDB 97.03100% -79 - C5 -2OS2 10.3 KDM4A_HUMAN
67 HHSearch 97.02100% -80 - C5 -2OX0 8.7 KDM4A_HUMAN
7 PsiBlast_PDB 97.01100% -83 - C5 -3NJY 3.6 KDM4A_HUMAN
32 PsiBlast_CBE 96.93100% -80 - C5 -2OX0 8.6 KDM4A_HUMAN
6 PsiBlast_PDB 96.81100% -77 - C5 -2VD7 3.9 KDM4A_HUMAN
13 PsiBlast_PDB 96.80100% -79 - C5 -3RVH 5.2 KDM4A_HUMAN
24 PsiBlast_CBE 96.73100% -76 - C5 -3U4S 3.3 KDM4A_HUMAN
16 PsiBlast_PDB 96.62100% -78 - C5 -4BIS 3.6 ?
31 PsiBlast_CBE 96.60100% -77 - C5 -2VD7 4.2 KDM4A_HUMAN
15 PsiBlast_PDB 96.57100% -81 - C5 -4AI9 3.4 KDM4A_HUMAN
28 PsiBlast_CBE 96.54100% -80 - C5 -2YBS 10.0 KDM4A_HUMAN
8 PsiBlast_PDB 96.46100% -81 - C5 -2YBP 10.5 KDM4A_HUMAN
1 PsiBlast_PDB 96.43100% -78 - C5 -2OQ6 8.6 KDM4A_HUMAN
26 PsiBlast_CBE 96.42100% -81 - C5 -3PDQ 4.5 KDM4A_HUMAN
23 PsiBlast_CBE 96.40100% -82 - C5 -4AI9 3.6 KDM4A_HUMAN
17 PsiBlast_PDB 96.40100% -80 - C5 -2P5B 10.7 KDM4A_HUMAN
34 PsiBlast_CBE 96.35100% -76 - C5 -2OS2 10.1 KDM4A_HUMAN
4 PsiBlast_PDB 96.32100% -79 - C5 -2OT7 7.8 KDM4A_HUMAN
27 PsiBlast_CBE 96.31100% -82 - C5 -3NJY 4.3 KDM4A_HUMAN
36 PsiBlast_CBE 96.25100% -79 - C5 -2OQ6 8.2 KDM4A_HUMAN
45 PsiBlast_CBE 96.08100% -81 - C5 -2WWJ 6.5 KDM4A_HUMAN
33 PsiBlast_CBE 95.99100% -79 - C5 -2OT7 7.7 KDM4A_HUMAN
35 PsiBlast_CBE 95.97100% -79 - C5 -2OQ7 3.0 KDM4A_HUMAN
60 Fugue 95.79100% -85 - C5 -2GP5 3.0 KDM4A_HUMAN
19 PsiBlast_PDB 95.65100% -79 - C5 -2Q8D 4.2 KDM4A_HUMAN
20 PsiBlast_PDB 95.49100% -80 - C5 -2Q8E 4.2 KDM4A_HUMAN
48 PsiBlast_CBE 95.24100% -80 - C5 -2PXJ 4.7 KDM4A_HUMAN
41 PsiBlast_CBE 95.13100% -86 - C5 -2GP5 3.2 KDM4A_HUMAN
18 PsiBlast_PDB 95.10100% -80 - C5 -2Q8C 4.2 KDM4A_HUMAN
40 PsiBlast_CBE 94.75100% -83 - C5 -2P5B 2.9 KDM4A_HUMAN
37 PsiBlast_CBE 94.70100% -84 - C5 -2Q8E 5.5 KDM4A_HUMAN
38 PsiBlast_CBE 94.54100% -82 - C5 -2Q8D 5.3 KDM4A_HUMAN
47 PsiBlast_CBE 94.30100% -84 - C5 -2PXJ 4.5 KDM4A_HUMAN
46 PsiBlast_CBE 94.28100% -75 - C5 -2WWJ 6.5 KDM4A_HUMAN
39 PsiBlast_CBE 93.96100% -85 - C5 -2Q8C 5.3 KDM4A_HUMAN
49 PsiBlast_CBE 89.6481% -81 - C5 -2XML 2.8 KDM4C_HUMAN
50 PsiBlast_CBE 89.6181% -81 - C5 -2XML 2.8 KDM4C_HUMAN
68 HHSearch 82.8165% -72 * C5 *3DXT - KDM4D_HUMAN
69 HHSearch 66.9342% -59 - C5 -3OPT 3.2 RPH1_YEAST
70 HHSearch 61.9734% -49 - C5 -4IGQ 3.3 ?