@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF02375_KDM4E_: (2014-09-29 )
MKSVHSSPQNTSHTIMTFYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWKARQMYDDIEDILIATPLQQVTSGQGGVFTQYHKKKKAMRVGQYRRLANSKKYQTPPHQNFADLEQRYWKSHPGNPPIYGADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRGCEAFLRHKVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMASQCSCGESTVTFSMDPFVRIVQPESYELWKHRQ

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AKG_A_5(4HON)
KDM4D_HUMAN
[Raw transfer]



AKG_A_5(2GP5)
KDM4A_HUMAN
[Raw transfer]



AKG_B_23(4HON)
KDM4D_HUMAN
[Raw transfer]



2HG_A_6(2YBK)
KDM4A_HUMAN
[Raw transfer]



OGA_A_9(2OQ6)
KDM4A_HUMAN
[Raw transfer]



OGA_A_3(2XML)
KDM4C_HUMAN
[Raw transfer]



OGA_A_9(2OT7)
KDM4A_HUMAN
[Raw transfer]



OGA_A_9(2OS2)
KDM4A_HUMAN
[Raw transfer]



OGA_A_10(2OX0)
KDM4A_HUMAN
[Raw transfer]



S2G_A_8(2YBS)
KDM4A_HUMAN
[Raw transfer]



PD2_B_9(2W2I)
KDM4E_HUMAN
[Raw transfer]



PD2_A_5(2W2I)
KDM4E_HUMAN
[Raw transfer]



PD2_C_14(2W2I)
KDM4E_HUMAN
[Raw transfer]



08P_A_7(3U4S)
KDM4A_HUMAN
[Raw transfer]



GOL_A_10(3DXU)
KDM4D_HUMAN
[Raw transfer]



2HG_A_8(2YBP)
KDM4A_HUMAN
[Raw transfer]



GOL_A_9(3DXT)
KDM4D_HUMAN
[Raw transfer]



HQ2_A_5(3RVH)
KDM4A_HUMAN
[Raw transfer]



OGA_A_7(3DXU)
KDM4D_HUMAN
[Raw transfer]



OGA_A_4(4IGQ)
?
[Raw transfer]



AKG_A_2(3OPT)
RPH1_YEAST
[Raw transfer]



KC6_A_5(3PDQ)
KDM4A_HUMAN
[Raw transfer]



8XQ_A_5(3NJY)
KDM4A_HUMAN
[Raw transfer]



PD2_A_5(2VD7)
KDM4A_HUMAN
[Raw transfer]



0WS_A_6(4GD4)
KDM4A_HUMAN
[Raw transfer]



CHAIN_C_3(3U4S)
KDM4A_HUMAN
[Raw transfer]
-
PDO_A_19(4HON)
KDM4D_HUMAN
[Raw transfer]



CHAIN_B_2(4IGQ)
?
[Raw transfer]
-
CHAIN_C_3(2OT7)
KDM4A_HUMAN
[Raw transfer]
-
CHAIN_F_3(4HON)
KDM4D_HUMAN
[Raw transfer]
-
CHAIN_G_4(4HON)
KDM4D_HUMAN
[Raw transfer]
-
CHAIN_C_3(2OS2)
KDM4A_HUMAN
[Raw transfer]
-
CHAIN_C_3(2OX0)
KDM4A_HUMAN
[Raw transfer]
-
CHAIN_C_3(2OQ6)
KDM4A_HUMAN
[Raw transfer]
-
CHAIN_C_3(2YBP)
KDM4A_HUMAN
[Raw transfer]
-
CHAIN_C_3(2YBS)
KDM4A_HUMAN
[Raw transfer]
-
21 PsiBlast_CBE 97.50100%-110 - C3 -2W2I 5.0 KDM4E_HUMAN
22 PsiBlast_CBE 97.21100%-111 - C3 -2W2I 5.2 KDM4E_HUMAN
1 PsiBlast_PDB 96.76100%-112 - C3 -2W2I 5.0 KDM4E_HUMAN
4 PsiBlast_PDB 96.4084%-104 - C3 -4HON 6.9 KDM4D_HUMAN
23 PsiBlast_CBE 96.1684%-105 - C3 -4HON 5.9 KDM4D_HUMAN
3 PsiBlast_PDB 93.5984% -96 - C3 -3DXU 2.6 KDM4D_HUMAN
34 HHSearch 92.9383% -97 - C3 -3DXT - KDM4D_HUMAN
25 Fugue 92.1365%-100 - C3 -2GP5 3.0 KDM4A_HUMAN
24 Fugue 91.5366% -99 - C3 -2OX0 8.5 KDM4A_HUMAN
19 PsiBlast_PDB 91.4966% -99 - C3 -3RVH 5.3 KDM4A_HUMAN
20 PsiBlast_PDB 91.2966% -99 - C3 -4GD4 3.8 KDM4A_HUMAN
16 PsiBlast_PDB 91.2366% -99 - C3 -3PDQ 3.9 KDM4A_HUMAN
12 PsiBlast_PDB 91.0266% -97 - C3 -2VD7 3.7 KDM4A_HUMAN
6 PsiBlast_PDB 90.8967%-104 - C3 -2XML 2.9 KDM4C_HUMAN
18 PsiBlast_PDB 90.8466% -97 - C3 -3U4S 3.2 KDM4A_HUMAN
9 PsiBlast_PDB 90.8166% -99 - C3 -2OS2 9.3 KDM4A_HUMAN
17 PsiBlast_PDB 90.6066% -99 - C3 -2YBK 3.3 KDM4A_HUMAN
10 PsiBlast_PDB 90.4366% -97 - C3 -2OT7 8.0 KDM4A_HUMAN
14 PsiBlast_PDB 90.4166% -99 - C3 -2YBP 8.3 KDM4A_HUMAN
15 PsiBlast_PDB 90.3566%-102 - C3 -2YBS 7.7 KDM4A_HUMAN
7 PsiBlast_PDB 90.3366% -98 - C3 -2OQ6 8.6 KDM4A_HUMAN
13 PsiBlast_PDB 89.7566%-103 - C3 -3NJY 3.5 KDM4A_HUMAN
36 HHSearch 72.7642% -89 - C3 -3OPT 3.2 RPH1_YEAST
37 HHSearch 67.5735% -84 - C3 -4IGQ 3.3 ?