@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF02825_PAR14_HUMAN: (2014-10-02 )
MAVPGSFPLLVEGSWGPDPPKNLNTKLQMYFQSPKRSGGGECEVRQDPRSPSRFLVFFYPEDVRQKVLERKNHELVWQGKGTFKLTVQLPATPDEIDHVFEEELLTKESKTKEDVKEPDVSEELDTKLPLDGGLDKMEDIPEECENISSLVAFENLKANVTDIMLILLVENISGLSNDDFQVEIIRDFDVAVVTFQKHIDTIRFVDDCTKHHSIKQLQLSPRLLEVTNTIRVENLPPGADDYSLKLFFENPYNGGGRVANVEYFPEESSALIEFFDRKVLDTIMATKLDFNKMPLSVFPYYASLGTALYGKEKPLIKLPAPFEESLDLPLWKFLQKKNHLIEEINDEMRRCHCELTWSQLSGKVTIRPAATLVNEGRPRIKTWQADTSTTLSSIRSKYKVNPIKVDPTMWDTIKNDVKDDRILIEFDTLKEMVILAGKSEDVQSIEVQVRELIESTTQKIKREEQSLKEKMIISPGRYFLLCHSSLLDHLLTECPEIEICYDRVTQHLCLKGPSADVYKAKCEIQEKVYTMAQKNIQVSPEIFQFLQQVNWKEFSKCLFIAQKILALYELEGTTVLLTSCSSEALLEAEKQMLSALNYKRIEVENKEVLHGKKWKGLTHNLLKKQNSSPNTVIINELTSETTAEVIITGCVKEVNETYKLLFNFVEQNMKIERLVEVKPSLVIDYLKTEKKLFWPKIKKVNVQVSFNPENKQKGILLTGSKTEVLKAVDIVKQVWDSVCVKSVHTDKPGAKQFFQDKARFYQSEIKRLFGCYIELQENEVMKEGGSPAGQKCFSRTVLAPGVVLIVQQGDLARLPVDVVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKREGRLLPGNATISKAGKLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKENFQFKKDGHCLKEIYLVDVSEKTVEAFAEAVKTVFKATLPDTAAPPGLPPAAAGPGKTSWEKGSLVSPGGLQMLLVKEGVQNAKTDVVVNSVPLDLVLSRGPLSKSLLEKAGPELQEELDTVGQGVAVSMGTVLKTSSWNLDCRYVLHVVAPEWRNGSTSSLKIMEDIIRECMEITESLSLKSIAFPAIGTGNLGFPKNIFAELIISEVFKFSSKNQLKTLQEVHFLLHPSDHENIQAFSDEFARRANGNLVSDKIPKAKDTQGFYGTVSSPDSGVYEMKIGSIIFQVASGDITKEEADVIVNSTSNSFNLKAGVSKAILECAGQNVERECSQQAQQRKNDYIITGGGFLRCKNIIHVIGGNDVKSSVSSVLQECEKKNYSSICLPAIGTGNAKQHPDKVAEAIIDAIEDFVQKGSAQSVKKVKVVIFLPQVLDVFYANMKKREGTQLSSQQSVMSKLASFLGFSKQSPQKKNHLVLEKKTESATFRVCGENVTCVEYAISWLQDLIEKEQCPYTSEDECIKDFDEKEYQELNELQKKLNINISLDHKRPLIKVLGISRDVMQARDEIEAMIKRVRLAKEQESRADCISEFIEWQYNDNNTSHCFNKMTNLKLEDARREKKKTVDVKINHRHYTVNLNTYTATDTKGHSLSVQRLTKSKVDIPAHWSDMKQQNFCVVELLPSDPEYNTVASKFNQTCSHFRIEKIERIQNPDLWNSYQAKKKTMDAKNGQTMNEKQLFHGTDAGSVPHVNRNGFNRSYAGKNAVAYGKGTYFAVNANYSANDTYSRPDANGRKHVYYVRVLTGIYTHGNHSLIVPPSKNPQNPTDLYDTVTDNVHHPSLFVAFYDYQAYPEYLITFRK

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

3AB_D_14(3SE2)

[Raw transfer]



3AB_B_6(3GOY)
PAR14_HUMAN
[Raw transfer]



3AB_C_7(3GOY)
PAR14_HUMAN
[Raw transfer]



3AB_C_10(3SE2)
PAR14_HUMAN
[Raw transfer]



3AB_D_8(3GOY)

[Raw transfer]



3AB_A_5(3GOY)
PAR14_HUMAN
[Raw transfer]



QDR_B_4(3SMI)

[Raw transfer]



QDR_A_3(3SMI)
PAR14_HUMAN
[Raw transfer]



LDR_B_8(3SE2)
PAR14_HUMAN
[Raw transfer]



0RY_A_5(4F1L)
PAR14_HUMAN
[Raw transfer]



0RY_C_8(4F1L)
PAR14_HUMAN
[Raw transfer]



LDR_A_5(3SE2)
PAR14_HUMAN
[Raw transfer]



0RZ_A_3(4F1Q)
PAR14_HUMAN
[Raw transfer]



FDR_A_3(3SMJ)
PAR14_HUMAN
[Raw transfer]



3AB_A_7(3HKV)
PAR10_HUMAN
[Raw transfer]



0RZ_B_5(4F1Q)

[Raw transfer]



FDR_B_5(3SMJ)

[Raw transfer]



0RY_D_10(4F1L)

[Raw transfer]



GOL_A_4(3SMJ)
PAR14_HUMAN
[Raw transfer]



0RU_A_5(4F0E)
PAR15_HUMAN
[Raw transfer]



GAB_A_7(2PQF)
PAR12_HUMAN
[Raw transfer]



0RY_C_8(4F1L)

[Raw transfer]



0RY_D_10(4F1L)
PAR14_HUMAN
[Raw transfer]



0RY_A_5(4F1L)
PAR14_HUMAN
[Raw transfer]
14 PsiBlast_PDB 47.4665% -5 - C2 -4F0E 5.9 PAR15_HUMAN
29 PsiBlast_CBE 44.37100% -7 - C2 -3SE2 6.0 PAR14_HUMAN
32 PsiBlast_CBE 43.91100% -8 - C2 -3GOY 3.8 PAR14_HUMAN
3 PsiBlast_PDB 43.88100% -7 - C2 -3GOY 3.6 PAR14_HUMAN
30 PsiBlast_CBE 43.84100% -9 - C2 -3GOY 4.1
22 PsiBlast_CBE 43.83100% -4 - C2 -4F1L 6.0
28 PsiBlast_CBE 43.70100% -4 - C2 -3SE2 4.5 PAR14_HUMAN
31 PsiBlast_CBE 43.69100% -8 * C2 *3GOY 4.3 PAR14_HUMAN
27 PsiBlast_CBE 43.54100% -0 - C2 -3SE2 4.7
8 PsiBlast_PDB 43.51100% -3 - C2 -4F1Q 5.3 PAR14_HUMAN
23 PsiBlast_CBE 43.48100% -1 - C2 -4F1L 6.0 PAR14_HUMAN
4 PsiBlast_PDB 43.37100% -3 - C2 -3SE2 6.4 PAR14_HUMAN
7 PsiBlast_PDB 43.26100% -3 - C2 -4F1L 6.5 PAR14_HUMAN
25 PsiBlast_CBE 43.22100% -4 - C2 -3SMJ 6.0
21 PsiBlast_CBE 42.89100% -2 - C2 -4F1Q 5.1
24 PsiBlast_CBE 42.84100% 2 - C2 -4F1L 3.0 PAR14_HUMAN
6 PsiBlast_PDB 42.79100% -2 - C2 -3SMJ 6.4 PAR14_HUMAN
5 PsiBlast_PDB 42.63100% -5 - C2 -3SMI 6.5 PAR14_HUMAN
26 PsiBlast_CBE 41.88100% 1 - C2 -3SMI 6.8
17 PsiBlast_PDB 38.7937% 10 - C2 -2PQF 4.0 PAR12_HUMAN
16 PsiBlast_PDB 37.1940% 16 - C2 -3HKV 4.2 PAR10_HUMAN