@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF02868_ELAS_PSEAE: (2014-10-03 )
MKKVSTLDLLFVAIMGVSPAAFAADLIDVSKLPSKAAQGAPGPVTLQAAVGAGGADELKAIRSTTLPNGKQVTRYEQFHNGVRVVGEAITEVKGPGKSVAAQRSGHFVANIAADLPGSTTAAVSAEQVLAQAKSLKAQGRKTENDKVELVIRLGENNIAQLVYNVSYLIPGEGLSRPHFVIDAKTGEVLDQWEGLAHAEAGGPGGNQKIGKYTYGSDYGPLIVNDRCEMDDGNVITVDMNSSTDDSKTTPFRFACPTNTYKQVNGAYSPLNDAHFFGGVVFKLYRDWFGTSPLTHKLYMKVHYGRSVENAYWDGTAMLFGDGATMFYPLVSLDVAAHEVSHGFTEQNSGLIYRGQSGGMNEAFSDMAGEAAEFYMRGKNDFLIGYDIKKGSGALRYMDQPSRDGRSIDNASQYYNGIDVHHSSGVYNRAFYLLANSPGWDTRKAFEVFVDANRYYWTATSNYNSGACGVIRSAQNRNYSAADVTRAFSTVGVTCPSAL

Atome Classification :

(16 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

RDF_A_7(3DBK)
ELAS_PSEAE
[Raw transfer]




RDF_E_2(1TLP)
THER_BACTH
[Raw transfer]




0PJ_E_2(5TMN)
THER_BACTH
[Raw transfer]




HPI_A_5(1U4G)
ELAS_PSEAE
[Raw transfer]




0PK_E_2(4TMN)
THER_BACTH
[Raw transfer]




0PI_E_2(6TMN)
THER_BACTH
[Raw transfer]




0ZN_E_2(1TMN)
THER_BACTH
[Raw transfer]




TI1_A_7(1QF1)
THER_BACTH
[Raw transfer]




0FA_E_7(2TMN)
THER_BACTH
[Raw transfer]




TI2_A_7(1QF0)
THER_BACTH
[Raw transfer]




VAL_E_2(1LNE)
THER_BACTH
[Raw transfer]




VAL_E_2(1LNC)
THER_BACTH
[Raw transfer]




VAL_E_2(8TLN)
THER_BACTH
[Raw transfer]




VAL_E_2(1LND)
THER_BACTH
[Raw transfer]




VAL_E_2(1LNF)
THER_BACTH
[Raw transfer]




VAL_E_2(1LNB)
THER_BACTH
[Raw transfer]




LYS_E_3(1LNB)
THER_BACTH
[Raw transfer]




LYS_E_3(8TLN)
THER_BACTH
[Raw transfer]




LYS_E_3(1LNF)
THER_BACTH
[Raw transfer]




LYS_E_3(1LNC)
THER_BACTH
[Raw transfer]




LYS_E_3(1LND)
THER_BACTH
[Raw transfer]




LYS_E_3(1LNE)
THER_BACTH
[Raw transfer]




DMS_A_8(1QF1)
THER_BACTH
[Raw transfer]




DMS_A_8(1QF0)
THER_BACTH
[Raw transfer]




1 PsiBlast_PDB 98.93100% -74 - C1 -1U4G 7.4 ELAS_PSEAE
3 PsiBlast_PDB 97.31100% -72 - C1 -3DBK 6.6 ELAS_PSEAE
10 PsiBlast_PDB 6.6533% -59 - C1 -4TMN 7.5 THER_BACTH
7 PsiBlast_PDB 6.4933% -60 * C1 *1TLP 5.2 THER_BACTH
12 PsiBlast_PDB 6.3233% -59 - C1 -6TMN 6.1 THER_BACTH
14 PsiBlast_PDB 5.2033% -58 - C1 -1LNE 3.8 THER_BACTH
9 PsiBlast_PDB 5.1033% -58 - C1 -2TMN 3.5 THER_BACTH
17 PsiBlast_PDB 5.0933% -58 - C1 -1LNC 3.8 THER_BACTH
11 PsiBlast_PDB 4.8533% -59 - C1 -5TMN 6.0 THER_BACTH
15 PsiBlast_PDB 4.5633% -58 - C1 -1LNF 3.8 THER_BACTH
16 PsiBlast_PDB 4.4133% -57 - C1 -1LNB 3.6 THER_BACTH
13 PsiBlast_PDB 4.1333% -57 - C1 -8TLN 3.7 THER_BACTH
19 PsiBlast_PDB 3.7733% -57 - C1 -1QF0 8.7 THER_BACTH
8 PsiBlast_PDB 2.7133% -58 - C1 -1TMN 7.6 THER_BACTH
20 PsiBlast_PDB 1.9833% -55 - C1 -1QF1 7.2 THER_BACTH
18 PsiBlast_PDB 1.3333% -56 - C1 -1LND 3.7 THER_BACTH