@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF02897_PPCE_PIG: (2014-10-03 )
MLSFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDWIP

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ZPR_A_2(1H2Y)
PPCE_PIG
[Raw transfer]



2P8_A_2(4AN1)
PPCE_PIG
[Raw transfer]



2P4_A_2(4AMZ)
PPCE_PIG
[Raw transfer]



2P2_A_2(4AMY)
PPCE_PIG
[Raw transfer]



ZPR_A_2(1QFS)
PPCE_PIG
[Raw transfer]



4I4_A_2(4BCB)
PPCE_PIG
[Raw transfer]



JKT_A_2(4BCC)
PPCE_PIG
[Raw transfer]



TDV_A_2(4BCD)
PPCE_PIG
[Raw transfer]



2P6_A_2(4AN0)
PPCE_PIG
[Raw transfer]



X98_A_2(3EQ8)
PPCE_PIG
[Raw transfer]



GOL_A_10(1E5T)
PPCE_PIG
[Raw transfer]



GOL_A_6(2XDW)
PPCE_PIG
[Raw transfer]



GOL_A_6(1VZ3)
PPCE_PIG
[Raw transfer]



GOL_A_5(1H2X)
PPCE_PIG
[Raw transfer]



CHAIN_P_2(2XDW)
PPCE_PIG
[Raw transfer]
-
ZPR_A_2(3MUO)
?
[Raw transfer]



ZPR_A_2(3IUQ)
?
[Raw transfer]



PHQ_I_2(1E8M)
PPCE_PIG
[Raw transfer]



CHAIN_I_2(1E8N)
PPCE_PIG
[Raw transfer]
-
SIN_A_2(1O6G)
PPCE_PIG
[Raw transfer]



CHAIN_B_2(1UOP)
PPCE_PIG
[Raw transfer]
-
CHAIN_B_2(1UOO)
PPCE_PIG
[Raw transfer]
-
CHAIN_B_2(1UOQ)
PPCE_PIG
[Raw transfer]
-
BE2_I_3(1E8N)
PPCE_PIG
[Raw transfer]



SIN_A_2(1H2Z)
PPCE_PIG
[Raw transfer]



SIN_A_2(1O6F)
PPCE_PIG
[Raw transfer]
22 PsiBlast_CBE 95.20100%-106 - C1 -4BCC 7.6 PPCE_PIG
11 PsiBlast_PDB 94.9499%-107 - C1 -1O6F 4.1 PPCE_PIG
25 PsiBlast_CBE 94.93100%-106 * C1 *4AN0 5.6 PPCE_PIG
8 PsiBlast_PDB 94.0399%-105 - C1 -1O6G 4.5 PPCE_PIG
26 PsiBlast_CBE 94.01100%-105 - C1 -4AMZ 4.7 PPCE_PIG
21 PsiBlast_CBE 93.97100%-105 - C1 -4BCD 8.5 PPCE_PIG
27 PsiBlast_CBE 93.79100%-105 - C1 -4AMY 5.9 PPCE_PIG
24 PsiBlast_CBE 93.77100%-105 - C1 -4AN1 5.4 PPCE_PIG
23 PsiBlast_CBE 93.67100%-106 - C1 -4BCB 6.3 PPCE_PIG
9 PsiBlast_PDB 93.5899%-106 - C1 -1H2X 3.0 PPCE_PIG
2 PsiBlast_PDB 93.5799%-105 - C1 -1E8N 8.6 PPCE_PIG
4 PsiBlast_PDB 93.2099%-104 - C1 -1UOP 7.1 PPCE_PIG
29 PsiBlast_CBE 92.88100%-106 - C1 -3EQ8 7.1 PPCE_PIG
14 PsiBlast_PDB 92.8299%-105 - C1 -1E5T 2.2 PPCE_PIG
5 PsiBlast_PDB 92.7399%-105 - C1 -1UOQ 6.6 PPCE_PIG
31 PsiBlast_CBE 92.48100%-105 - C1 -2XDW 5.8 PPCE_PIG
10 PsiBlast_PDB 92.2999%-105 - C1 -1H2Y 5.4 PPCE_PIG
6 PsiBlast_PDB 92.1199%-104 - C1 -1H2Z 4.9 PPCE_PIG
13 PsiBlast_PDB 91.7699%-105 - C1 -1VZ2 - PPCE_PIG
7 PsiBlast_PDB 91.7699%-104 - C1 -1VZ3 2.4 PPCE_PIG
32 PsiBlast_CBE 91.59100%-105 - C1 -1QFS 5.0 PPCE_PIG
1 PsiBlast_PDB 91.5699%-105 - C1 -1E8M 6.2 PPCE_PIG
3 PsiBlast_PDB 90.4699%-103 - C1 -1UOO 7.0 PPCE_PIG
16 PsiBlast_PDB 25.3740% -95 - C1 -3IUQ 5.0 ?
19 PsiBlast_PDB 23.6140% -89 - C1 -3MUO 3.0 ?
18 PsiBlast_PDB 23.0140% -88 - C1 -3MUN - ?