@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF02897_PPCE_RAT: (2014-10-03 )
MLSFQYPDVYRDETSVQDYHGHKICDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNTLSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFTCMAWTHDGKGMFYNSYPQQDGKSDGTETSTNLHQKLCYHVLGTDQSEDVLCAEFPDEPKWMGGAELSDDGRYVLLSIWEGCDPVNRLWYCDLQQGSNGINGILKWVKLIDNFEGEYDYITNEGTVFTFKTNRNSPNYRLINIDFTDPDESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLRNVKNILQLHDLTTGALLKTFPLDVGSVVGYSGRKKDSEIFYQFTSFLSPGVIYHCDLTREELEPRVFREVTVKGIDASDYQTIQVFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTTSKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKFHKFTIGHAWTTDYGCSDSKQHFEWLLKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQSNPLLIHVDTKAGHGPGKPTAKVIEEVSDMFAFIARCLNIEWIQ

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

2P8_A_2(4AN1)
PPCE_PIG
[Raw transfer]




2P4_A_2(4AMZ)
PPCE_PIG
[Raw transfer]




ZPR_A_2(1H2Y)
PPCE_PIG
[Raw transfer]




2P2_A_2(4AMY)
PPCE_PIG
[Raw transfer]




4I4_A_2(4BCB)
PPCE_PIG
[Raw transfer]




ZPR_A_2(1QFS)
PPCE_PIG
[Raw transfer]




2P6_A_2(4AN0)
PPCE_PIG
[Raw transfer]




JKT_A_2(4BCC)
PPCE_PIG
[Raw transfer]




GOL_A_6(4BCD)
PPCE_PIG
[Raw transfer]




GOL_A_10(1E5T)
PPCE_PIG
[Raw transfer]




X98_A_2(3EQ8)
PPCE_PIG
[Raw transfer]




GOL_A_6(4BCC)
PPCE_PIG
[Raw transfer]




CHAIN_P_2(2XDW)
PPCE_PIG
[Raw transfer]

-

ZPR_A_2(3IUQ)
?
[Raw transfer]




PHQ_I_2(1E8M)
PPCE_PIG
[Raw transfer]




CHAIN_I_2(1E8N)
PPCE_PIG
[Raw transfer]

-

CHAIN_B_2(1UOP)
PPCE_PIG
[Raw transfer]

-

SIN_A_2(1O6G)
PPCE_PIG
[Raw transfer]




CHAIN_B_2(1UOQ)
PPCE_PIG
[Raw transfer]

-

CHAIN_B_2(1UOO)
PPCE_PIG
[Raw transfer]

-

SIN_A_2(1H2Z)
PPCE_PIG
[Raw transfer]




BE2_I_3(1E8N)
PPCE_PIG
[Raw transfer]




SIN_A_2(1O6F)
PPCE_PIG
[Raw transfer]




22 PsiBlast_CBE 97.6595%-108 - C1 -4BCC 7.3 PPCE_PIG
25 PsiBlast_CBE 97.5695%-108 - C1 -4AN0 5.7 PPCE_PIG
21 PsiBlast_CBE 97.5595%-107 - C1 -4BCD 2.0 PPCE_PIG
14 PsiBlast_PDB 97.4394%-107 - C1 -1E5T 2.2 PPCE_PIG
11 PsiBlast_PDB 97.3794%-107 - C1 -1O6G 4.5 PPCE_PIG
5 PsiBlast_PDB 97.3295%-108 - C1 -1UOQ 6.7 PPCE_PIG
27 PsiBlast_CBE 97.2395%-107 - C1 -4AMY 5.9 PPCE_PIG
7 PsiBlast_PDB 97.2195%-109 - C1 -1O6F 4.1 PPCE_PIG
8 PsiBlast_PDB 97.2095%-108 - C1 -1H2X - PPCE_PIG
2 PsiBlast_PDB 97.1795%-107 - C1 -1E8N 8.8 PPCE_PIG
26 PsiBlast_CBE 97.1295%-107 - C1 -4AMZ 5.0 PPCE_PIG
24 PsiBlast_CBE 97.1195%-107 - C1 -4AN1 5.6 PPCE_PIG
23 PsiBlast_CBE 97.0795%-108 - C1 -4BCB 5.9 PPCE_PIG
4 PsiBlast_PDB 97.0595%-107 - C1 -1UOP 7.2 PPCE_PIG
6 PsiBlast_PDB 96.9695%-106 - C1 -1H2Z 5.1 PPCE_PIG
31 PsiBlast_CBE 96.7895%-107 - C1 -2XDW 5.9 PPCE_PIG
9 PsiBlast_PDB 96.6695%-108 - C1 -1H2Y 5.5 PPCE_PIG
32 PsiBlast_CBE 96.6395%-107 - C1 -1QFS 5.1 PPCE_PIG
1 PsiBlast_PDB 96.6395%-107 - C1 -1E8M 6.3 PPCE_PIG
12 PsiBlast_PDB 96.5095%-106 - C1 -1VZ3 - PPCE_PIG
3 PsiBlast_PDB 96.3395%-105 - C1 -1UOO 7.2 PPCE_PIG
29 PsiBlast_CBE 96.2095%-108 - C1 -3EQ8 7.0 PPCE_PIG
13 PsiBlast_PDB 95.7994%-108 - C1 -1VZ2 - PPCE_PIG
16 PsiBlast_PDB 41.6541% -98 - C1 -3IUQ 5.0 ?