@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF03119_DNLJ_MYCTU: (2014-10-06 )
MSSPDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPELRTPDSPTQLVGGAGFATDFEPVDHLERMLSLDNAFTADELAAWAGRIHAEVGDAAHYLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVPEVLEVRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVGQATLHNASEIKRKGVLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFIMPTTCPECGSPLAPEKEGDADIRCPNARGCPGQLRERVFHVASRNGLDIEVLGYEAGVALLQAKVIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRVLVALSIRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRTLAGLTIVVTGSLTGFSRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLLADGPASRT

Atome Classification :

(18 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

3BD_A_7(3BAB)
DNLJ_ENTFA
[Raw transfer]



3BA_A_7(3BAA)
DNLJ_ENTFA
[Raw transfer]



AMP_B_2(1ZAU)
DNLJ_MYCTU
[Raw transfer]



0OW_A_5(4EFB)
DNLJ_ENTFA
[Raw transfer]



AMP_D_10(2OWO)
DNLJ_ECOLI
[Raw transfer]



IVH_A_2(3PN1)
DNLJ_HAEIN
[Raw transfer]



3B8_A_6(3BA8)
DNLJ_ENTFA
[Raw transfer]



0OV_A_5(4EFE)
DNLJ_ENTFA
[Raw transfer]



0OX_A_5(4EEQ)
DNLJ_ENTFA
[Raw transfer]



AMP_A_2(3SGI)
DNLJ_MYCTU
[Raw transfer]



3B9_A_7(3BA9)
DNLJ_ENTFA
[Raw transfer]



0XS_A_7(4GLX)
DNLJ_ECOLI
[Raw transfer]



AMP_A_3(3UQ8)
DNLJ_HAEIN
[Raw transfer]



AMP_A_5(1V9P)
DNLJ_THEFI
[Raw transfer]



AMP_A_5(1DGS)
DNLJ_THEFI
[Raw transfer]



1X8_A_2(4LH7)
DNLJ_ENTFA
[Raw transfer]



GOL_E_5(1TA8)
DNLJ_ENTFA
[Raw transfer]



1X7_A_2(4LH6)
DNLJ_ENTFA
[Raw transfer]



NACID_D_3(4GLX)
DNLJ_ECOLI
[Raw transfer]
-
NACID_D_3(2OWO)
DNLJ_ECOLI
[Raw transfer]
-
NACID_C_2(2OWO)
DNLJ_ECOLI
[Raw transfer]
-
NACID_C_2(4GLX)
DNLJ_ECOLI
[Raw transfer]
-
3 PsiBlast_PDB 83.6943% -84 - C1 -2OWO 6.4 DNLJ_ECOLI
6 PsiBlast_PDB 82.6444% -82 - C1 -1V9P 3.5 DNLJ_THEFI
5 PsiBlast_PDB 81.6442% -85 - C1 -4GLX 6.9 DNLJ_ECOLI
4 PsiBlast_PDB 80.5343% -79 - C1 -1DGS 4.2 DNLJ_THEFI
1 PsiBlast_PDB 41.1899% -66 - C1 -3SGI 5.0 DNLJ_MYCTU
2 PsiBlast_PDB 40.30100% -83 - C1 -1ZAU 4.7 DNLJ_MYCTU
20 PsiBlast_PDB 25.1841% -72 - C1 -4EFE 6.0 DNLJ_ENTFA
17 PsiBlast_PDB 25.0341% -72 - C1 -4LH7 4.4 DNLJ_ENTFA
16 PsiBlast_PDB 24.8341% -73 - C1 -4LH6 4.1 DNLJ_ENTFA
14 PsiBlast_PDB 24.7641% -73 - C1 -3BAB 7.0 DNLJ_ENTFA
13 PsiBlast_PDB 24.3141% -72 - C1 -3BAA 6.9 DNLJ_ENTFA
12 PsiBlast_PDB 23.8441% -72 * C1 *3BA9 6.5 DNLJ_ENTFA
15 PsiBlast_PDB 22.5141% -70 - C1 -1TA8 2.0 DNLJ_ENTFA
11 PsiBlast_PDB 22.4441% -71 - C1 -3BA8 5.3 DNLJ_ENTFA
19 PsiBlast_PDB 22.0641% -70 - C1 -4EFB 5.9 DNLJ_ENTFA
18 PsiBlast_PDB 21.2341% -69 - C1 -4EEQ 4.6 DNLJ_ENTFA
7 PsiBlast_PDB 13.6243% -61 - C1 -3UQ8 5.1 DNLJ_HAEIN
9 PsiBlast_PDB 13.0043% -65 - C1 -3PN1 5.9 DNLJ_HAEIN