@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF03414_GGTA1_BOVIN: (2014-10-07 )
MNVKGKVILSMLVVSTVIVVFWEYIHSPEGSLFWINPSRNPEVGGSSIQKGWWLPRWFNNGYHEEDGDINEEKEQRNEDESKLKLSDWFNPFKRPEVVTMTKWKAPVVWEGTYNRAVLDNYYAKQKITVGLTVFAVGRYIEHYLEEFLTSANKHFMVGHPVIFYIMVDDVSRMPLIELGPLRSFKVFKIKPEKRWQDISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDKFGVETLGESVAQLQAWWYKADPNDFTYERRKESAAYIPFGEGDFYYHAAIFGGTPTQVLNITQECFKGILKDKKNDIEAQWHDESHLNKYFLLNKPTKILSPEYCWDYHIGLPADIKLVKMSWQTKEYNVVRNNV

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LAT_B_8(1VZU)
GGTA1_BOVIN
[Raw transfer]




LAT_B_7(1O7O)
GGTA1_BOVIN
[Raw transfer]




GDU_A_5(2VS5)
GGTA1_BOVIN
[Raw transfer]




NLC_B_9(2VS4)
GGTA1_BOVIN
[Raw transfer]




LAT_B_8(1GWV)
GGTA1_BOVIN
[Raw transfer]




LAT_A_5(1GWV)
GGTA1_BOVIN
[Raw transfer]




LAT_A_4(1O7O)
GGTA1_BOVIN
[Raw transfer]




SUGAR_A_3(1VZX)
GGTA1_BOVIN
[Raw transfer]

-

UPF_A_3(2VFZ)
GGTA1_BOVIN
[Raw transfer]




UPF_B_5(2VFZ)
GGTA1_BOVIN
[Raw transfer]




NLC_A_4(2VS3)
GGTA1_BOVIN
[Raw transfer]




NLC_B_7(2VS3)
GGTA1_BOVIN
[Raw transfer]




SUGAR_B_7(1VZX)
GGTA1_BOVIN
[Raw transfer]

-

NLC_A_5(2VS4)
GGTA1_BOVIN
[Raw transfer]




UDP_B_6(1GWV)
GGTA1_BOVIN
[Raw transfer]




SUGAR_A_5(1GX4)
GGTA1_BOVIN
[Raw transfer]

-

LAT_A_4(1VZU)
GGTA1_BOVIN
[Raw transfer]




SUGAR_B_11(1O7Q)
GGTA1_BOVIN
[Raw transfer]

-

SUGAR_B_11(1GX4)
GGTA1_BOVIN
[Raw transfer]

-

UPG_A_5(1G93)
GGTA1_BOVIN
[Raw transfer]




UDP_A_4(1VZT)
GGTA1_BOVIN
[Raw transfer]




UDP_A_3(1GX4)
GGTA1_BOVIN
[Raw transfer]




UDP_B_5(1GWW)
GGTA1_BOVIN
[Raw transfer]




UDP_B_8(1O7O)
GGTA1_BOVIN
[Raw transfer]




UDP_A_5(1O7O)
GGTA1_BOVIN
[Raw transfer]




UDP_B_6(1GX0)
GGTA1_BOVIN
[Raw transfer]




UDP_B_7(1VZT)
GGTA1_BOVIN
[Raw transfer]




UDP_B_12(1O7Q)
GGTA1_BOVIN
[Raw transfer]




UDP_A_5(1VZX)
GGTA1_BOVIN
[Raw transfer]




UDP_B_9(1VZU)
GGTA1_BOVIN
[Raw transfer]




UDP_A_3(1GX0)
GGTA1_BOVIN
[Raw transfer]




UDP_A_3(1GWW)
GGTA1_BOVIN
[Raw transfer]




UDP_A_3(1GWV)
GGTA1_BOVIN
[Raw transfer]




UDP_B_9(1VZX)
GGTA1_BOVIN
[Raw transfer]




UDP_A_3(2VS3)
GGTA1_BOVIN
[Raw transfer]




UDP_B_6(2VS3)
GGTA1_BOVIN
[Raw transfer]




UDP_B_9(1GX4)
GGTA1_BOVIN
[Raw transfer]




U5P_A_3(1G8O)
GGTA1_BOVIN
[Raw transfer]




UDP_A_5(1VZU)
GGTA1_BOVIN
[Raw transfer]




UDP_A_4(2VS4)
GGTA1_BOVIN
[Raw transfer]




UDP_B_6(1K4V)
GGTA1_BOVIN
[Raw transfer]




UDP_A_5(1K4V)
GGTA1_BOVIN
[Raw transfer]




UDP_A_2(2JCK)
GGTA1_BOVIN
[Raw transfer]




UDP_B_8(2VS4)
GGTA1_BOVIN
[Raw transfer]




UDP_A_2(2JCJ)
GGTA1_BOVIN
[Raw transfer]




TRS_A_5(2JCJ)
GGTA1_BOVIN
[Raw transfer]




UDP_A_3(2VXL)
GGTA1_BOVIN
[Raw transfer]




GAL_B_8(1GX0)
GGTA1_BOVIN
[Raw transfer]




GLC_B_7(1GWW)
GGTA1_BOVIN
[Raw transfer]




TRS_A_5(1VZT)
GGTA1_BOVIN
[Raw transfer]




TRS_B_8(1VZT)
GGTA1_BOVIN
[Raw transfer]




GAL_A_2(1G93)
GGTA1_BOVIN
[Raw transfer]




25 PsiBlast_CBE 90.42100%-108 - C1 -1GX0 6.9 GGTA1_BOVIN
8 PsiBlast_PDB 90.29100%-110 - C1 -1GX4 6.8 GGTA1_BOVIN
27 PsiBlast_CBE 90.06100%-107 - C1 -1GWV 6.8 GGTA1_BOVIN
24 PsiBlast_CBE 89.37100%-110 - C1 -1GX4 6.8 GGTA1_BOVIN
5 PsiBlast_PDB 88.72100%-108 - C1 -1GWV 6.7 GGTA1_BOVIN
26 PsiBlast_CBE 87.92100%-106 - C1 -1GWW 6.8 GGTA1_BOVIN
22 PsiBlast_CBE 86.90100%-108 - C1 -1O7Q 7.1 GGTA1_BOVIN
23 PsiBlast_CBE 86.79100%-109 - C1 -1K4V 6.8 GGTA1_BOVIN
6 PsiBlast_PDB 86.14100%-106 - C1 -1GWW 6.9 GGTA1_BOVIN
17 PsiBlast_PDB 86.0399%-107 - C1 -2VS4 7.1 GGTA1_BOVIN
7 PsiBlast_PDB 85.32100%-106 - C1 -1GX0 6.9 GGTA1_BOVIN
4 PsiBlast_PDB 85.16100%-107 - C1 -1K4V 6.5 GGTA1_BOVIN
12 PsiBlast_PDB 83.8799%-108 - C1 -1VZX 6.7 GGTA1_BOVIN
16 PsiBlast_PDB 82.9699%-106 - C1 -2VS3 7.0 GGTA1_BOVIN
35 PsiBlast_CBE 82.6299%-106 - C1 -1VZT 7.0 GGTA1_BOVIN
18 PsiBlast_PDB 81.9399%-105 - C1 -1VZT 6.6 GGTA1_BOVIN
31 PsiBlast_CBE 81.7099%-106 - C1 -1VZX 6.9 GGTA1_BOVIN
28 PsiBlast_CBE 81.6799%-106 - C1 -1O7O 6.8 GGTA1_BOVIN
34 PsiBlast_CBE 81.5299%-104 - C1 -2VS4 7.0 GGTA1_BOVIN
33 PsiBlast_CBE 81.3999%-109 - C1 -2VS3 6.8 GGTA1_BOVIN
32 PsiBlast_CBE 81.3799%-107 - C1 -1VZU 6.5 GGTA1_BOVIN
11 PsiBlast_PDB 81.1199%-108 - C1 -1VZU 6.3 GGTA1_BOVIN
10 PsiBlast_PDB 80.2599%-107 - C1 -1O7O 7.0 GGTA1_BOVIN
20 PsiBlast_PDB 78.2499%-114 - C1 -2VS5 4.9 GGTA1_BOVIN
1 PsiBlast_PDB 73.83100%-108 - C1 -1G8O 4.4 GGTA1_BOVIN
29 PsiBlast_CBE 66.9299%-110 - C1 -2VFZ 7.6 GGTA1_BOVIN
19 PsiBlast_PDB 66.76100%-111 - C1 -2JCJ 5.1 GGTA1_BOVIN
15 PsiBlast_PDB 63.7099%-112 - C1 -2VFZ 7.0 GGTA1_BOVIN
37 PsiBlast_CBE 60.3498%-113 * C1 *2VXL 5.1 GGTA1_BOVIN
13 PsiBlast_PDB 60.2899%-114 - C1 -2JCK 6.0 GGTA1_BOVIN
2 PsiBlast_PDB 53.35100%-112 - C1 -1G93 6.4 GGTA1_BOVIN