@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF04886_MMP9_MOUSE: (2014-10-09 )
MSPWQPLLLALLAFGCSSAAPYQRQPTFVVFPKDLKTSNLTDTQLAEAYLYRYGYTRAAQMMGEKQSLRPALLMLQKQLSLPQTGELDSQTLKAIRTPRCGVPDVGRFQTFKGLKWDHHNITYWIQNYSEDLPRDMIDDAFARAFAVWGEVAPLTFTRVYGPEADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGAGVQGDAHFDDDELWSLGKGVVIPTYYGNSNGAPCHFPFTFEGRSYSACTTDGRNDGTPWCSTTADYDKDGKFGFCPSERLYTEHGNGEGKPCVFPFIFEGRSYSACTTKGRSDGYRWCATTANYDQDKLYGFCPTRVDATVVGGNSAGELCVFPFVFLGKQYSSCTSDGRRDGRLWCATTSNFDTDKKWGFCPDQGYSLFLVAAHEFGHALGLDHSSVPEALMYPLYSYLEGFPLNKDDIDGIQYLYGRGSKPDPRPPATTTTEPQPTAPPTMCPTIPPTAYPTVGPTVGPTGAPSPGPTSSPSPGPTGAPSPGPTAPPTAGSSEASTESLSPADNPCNVDVFDAIAEIQGALHFFKDGWYWKFLNHRGSPLQGPFLTARTWPALPATLDSAFEDPQTKRVFFFSGRQMWVYTGKTVLGPRSLDKLGLGPEVTHVSGLLPRRLGKALLFSKGRVWRFDLKSQKVDPQSVIRVDKEFSGVPWNSHDIFQYQDKAYFCHGKFFWRVSFQNEVNKVDHEVNQVDDVGYVTYDLLQCP

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

0Y3_B_23(4H2E)
MMP9_HUMAN
[Raw transfer]



6MR_A_21(2OW0)
MMP9_HUMAN
[Raw transfer]



L29_A_10(4H82)
MMP9_HUMAN
[Raw transfer]



0XX_A_9(4H1Q)
MMP9_HUMAN
[Raw transfer]



L29_A_10(4H82)
MMP9_HUMAN
[Raw transfer]



6MR_B_22(2OW0)

[Raw transfer]



10B_A_8(4H3X)
MMP9_HUMAN
[Raw transfer]



0XX_B_15(4H1Q)

[Raw transfer]



0ZD_A_8(4HMA)

[Raw transfer]



STN_A_7(1GKD)
MMP9_HUMAN
[Raw transfer]



0ZD_A_8(4HMA)
MMP9_HUMAN
[Raw transfer]



STN_B_15(1GKD)
MMP9_HUMAN
[Raw transfer]



5MR_B_22(2OVZ)

[Raw transfer]



7MR_B_19(2OW1)

[Raw transfer]



NFH_B_16(1GKC)
MMP9_HUMAN
[Raw transfer]



5MR_A_21(2OVZ)
MMP9_HUMAN
[Raw transfer]



NFH_A_7(1GKC)
MMP9_HUMAN
[Raw transfer]



0Y3_B_23(4H2E)
MMP9_HUMAN
[Raw transfer]



10B_B_21(4H3X)
MMP9_HUMAN
[Raw transfer]



7MR_A_18(2OW1)
MMP9_HUMAN
[Raw transfer]



8MR_A_15(2OW2)
MMP9_HUMAN
[Raw transfer]



8MR_B_16(2OW2)

[Raw transfer]



BUM_B_16(1GKD)
MMP9_HUMAN
[Raw transfer]



BUM_A_8(1GKD)
MMP9_HUMAN
[Raw transfer]



BCN_B_(4H2E)
MMP9_HUMAN
[Raw transfer]



PGO_A_12(4HMA)
MMP9_HUMAN
[Raw transfer]



PEG_B_25(4H2E)
MMP9_HUMAN
[Raw transfer]



PEG_C_22(4H82)
MMP9_HUMAN
[Raw transfer]



CHAIN_B_2(3AYU)

[Raw transfer]
-
12 PsiBlast_PDB 19.1086% -88 - C1 -2OW0 3.6 MMP9_HUMAN
8 PsiBlast_PDB 19.0187% -88 - C1 -1GKC 2.7 MMP9_HUMAN
11 PsiBlast_PDB 17.9386% -84 - C1 -2OVZ 4.3 MMP9_HUMAN
30 PsiBlast_CBE 17.1586% -83 - C1 -4HMA 3.1
6 PsiBlast_PDB 16.8587% -80 - C1 -4H2E 3.4 MMP9_HUMAN
13 PsiBlast_PDB 16.6986% -80 - C1 -2OW1 2.7 MMP9_HUMAN
26 PsiBlast_CBE 16.4886% -81 - C1 -2OW1 2.8
23 PsiBlast_CBE 16.2887% -82 - C1 -1GKC 3.4 MMP9_HUMAN
21 PsiBlast_CBE 15.9087% -77 - C1 -4H3X 3.8 MMP9_HUMAN
33 PsiBlast_CBE 15.8486% -81 - C1 -4H82 3.3 MMP9_HUMAN
34 PsiBlast_CBE 15.7686% -78 - C1 -4H1Q 3.7
14 PsiBlast_PDB 15.6286% -80 - C1 -2OW2 2.5 MMP9_HUMAN
9 PsiBlast_PDB 15.6087% -78 - C1 -1GKD 3.7 MMP9_HUMAN
15 PsiBlast_PDB 15.3686% -78 - C1 -4H1Q 5.7 MMP9_HUMAN
24 PsiBlast_CBE 15.3187% -80 - C1 -1GKD 2.5 MMP9_HUMAN
7 PsiBlast_PDB 15.2687% -76 - C1 -4H3X 3.5 MMP9_HUMAN
28 PsiBlast_CBE 14.7986% -77 * C1 *2OVZ 3.2
25 PsiBlast_CBE 14.6086% -78 - C1 -2OW2 2.5
27 PsiBlast_CBE 14.3386% -75 - C1 -2OW0 3.1
22 PsiBlast_CBE 14.1387% -73 - C1 -4H2E 3.4 MMP9_HUMAN
17 PsiBlast_PDB 14.1086% -73 - C1 -4H82 3.0 MMP9_HUMAN
16 PsiBlast_PDB 13.7486% -73 - C1 -4HMA 3.3 MMP9_HUMAN
32 PsiBlast_CBE 13.4486% -73 - C1 -4H82 2.7 MMP9_HUMAN
20 PsiBlast_PDB 9.4968% -68 - C1 -3AYU 4.5