@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF04886_MMP9_RAT: (2014-10-09 )
MSPWQPLLLVLLALGYSFAAPHQRQPTYVVFPRDLKTSNLTDTQLAEDYLYRYGYTRAAQMMGEKQSLRPALLMLQKQLSLPQTGELDSETLKAIRSPRCGVPDVGKFQTFDGDLKWHHHNITYWIQSYTEDLPRDVIDDSFARAFAVWSAVTPLTFTRVYGLEADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGPGIQGDAHFDDDELWSLGKGAVVPTYFGNANGAPCHFPFTFEGRSYLSCTTDGRNDGKPWCGTTADYDTDRKYGFCPSENLYTEHGNGDGKPCVFPFIFEGHSYSACTTKGRSDGYRWCATTANYDQDKADGFCPTRADVTVTGGNSAGEMCVFPFVFLGKQYSTCTSEGRSDGRLWCATTSNFDADKKWGFCPDQGYSLFLVAAHEFGHALGLDHSSVPEALMYPMYHYHEDSPLHEDDIKGIHHLYGRGSKPDPRPPATTAAEPQPTAPPTMCSTAPPMAYPTGGPTVAPTGAPSPGPTGPPTAGPSEAPTESSTPDDNPCNVDVFDAIADIQGALHFFKDGRYWKFSNHGGNQLQGPFLIARTWPAFPSKLNSAFEDPQPKKIFFFLWAQMWVYTGQSVLGPRSLDKLGLGSEVTLVTGLLPRRGGKALLISRERIWKFDLKSQKVDPQSVTRLDNEFSGVPWNSHNVFQYQDKAYFCHDKYFWRVSFHNRVNQVDHVAYVTYDLLQCP

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

0Y3_B_23(4H2E)
MMP9_HUMAN
[Raw transfer]




0XX_A_9(4H1Q)
MMP9_HUMAN
[Raw transfer]




0XX_B_15(4H1Q)
MMP9_HUMAN
[Raw transfer]




L29_A_10(4H82)
MMP9_HUMAN
[Raw transfer]




6MR_A_21(2OW0)
MMP9_HUMAN
[Raw transfer]




6MR_B_22(2OW0)
MMP9_HUMAN
[Raw transfer]




L29_A_10(4H82)
MMP9_HUMAN
[Raw transfer]




STN_B_15(1GKD)
MMP9_HUMAN
[Raw transfer]




STN_A_7(1GKD)
MMP9_HUMAN
[Raw transfer]




0ZD_A_8(4HMA)
MMP9_HUMAN
[Raw transfer]




NFH_A_7(1GKC)
MMP9_HUMAN
[Raw transfer]




10B_A_8(4H3X)
MMP9_HUMAN
[Raw transfer]




0ZD_A_8(4HMA)
MMP9_HUMAN
[Raw transfer]




NFH_B_16(1GKC)
MMP9_HUMAN
[Raw transfer]




5MR_A_21(2OVZ)
MMP9_HUMAN
[Raw transfer]




0Y3_B_23(4H2E)
MMP9_HUMAN
[Raw transfer]




5MR_B_22(2OVZ)
MMP9_HUMAN
[Raw transfer]




7MR_B_19(2OW1)
MMP9_HUMAN
[Raw transfer]




10B_B_21(4H3X)
MMP9_HUMAN
[Raw transfer]




7MR_A_18(2OW1)
MMP9_HUMAN
[Raw transfer]




8MR_A_15(2OW2)
MMP9_HUMAN
[Raw transfer]




8MR_B_16(2OW2)
MMP9_HUMAN
[Raw transfer]




PGO_A_12(4HMA)
MMP9_HUMAN
[Raw transfer]




BUM_B_16(1GKD)
MMP9_HUMAN
[Raw transfer]




BCN_B_(4H2E)
MMP9_HUMAN
[Raw transfer]




BUM_A_8(1GKD)
MMP9_HUMAN
[Raw transfer]




PEG_B_25(4H2E)
MMP9_HUMAN
[Raw transfer]




PEG_C_22(4H82)
MMP9_HUMAN
[Raw transfer]




CHAIN_B_2(3AYU)
MMP2_HUMAN
[Raw transfer]

-

11 PsiBlast_PDB 19.2882% -96 - C1 -2OVZ 5.8 MMP9_HUMAN
12 PsiBlast_PDB 19.2382% -96 - C1 -2OW0 5.2 MMP9_HUMAN
7 PsiBlast_PDB 18.7482% -96 - C1 -1GKC 3.5 MMP9_HUMAN
30 PsiBlast_CBE 18.7382% -95 - C1 -4HMA 3.0 MMP9_HUMAN
26 PsiBlast_CBE 17.9182% -94 - C1 -2OW1 4.1 MMP9_HUMAN
33 PsiBlast_CBE 17.6882% -94 - C1 -4H82 4.6 MMP9_HUMAN
8 PsiBlast_PDB 17.1382% -91 - C1 -4H2E 4.2 MMP9_HUMAN
28 PsiBlast_CBE 17.0282% -92 - C1 -2OVZ 4.7 MMP9_HUMAN
22 PsiBlast_CBE 17.0182% -92 - C1 -1GKC 3.5 MMP9_HUMAN
34 PsiBlast_CBE 16.7282% -91 - C1 -4H1Q 4.3 MMP9_HUMAN
21 PsiBlast_CBE 16.7282% -93 - C1 -1GKD 2.8 MMP9_HUMAN
13 PsiBlast_PDB 16.6182% -90 - C1 -2OW1 3.7 MMP9_HUMAN
25 PsiBlast_CBE 16.5682% -92 - C1 -2OW2 3.7 MMP9_HUMAN
15 PsiBlast_PDB 16.5382% -90 - C1 -4H1Q 7.9 MMP9_HUMAN
27 PsiBlast_CBE 16.4482% -90 - C1 -2OW0 4.7 MMP9_HUMAN
6 PsiBlast_PDB 16.1082% -90 - C1 -1GKD 2.7 MMP9_HUMAN
14 PsiBlast_PDB 16.0982% -89 - C1 -2OW2 3.0 MMP9_HUMAN
9 PsiBlast_PDB 15.7582% -88 - C1 -4H3X 3.9 MMP9_HUMAN
24 PsiBlast_CBE 15.7082% -87 - C1 -4H2E 4.2 MMP9_HUMAN
32 PsiBlast_CBE 15.4582% -88 - C1 -4H82 2.7 MMP9_HUMAN
23 PsiBlast_CBE 15.1682% -86 * C1 *4H3X 4.0 MMP9_HUMAN
17 PsiBlast_PDB 15.1582% -87 - C1 -4H82 4.3 MMP9_HUMAN
16 PsiBlast_PDB 14.8182% -85 - C1 -4HMA 3.6 MMP9_HUMAN
20 PsiBlast_PDB 9.2462% -80 - C1 -3AYU 5.4 MMP2_HUMAN