@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF07647_EPHA3_MOUSE: (2014-10-11 )
MDCHLSILVLLGCCVLSCSGELSPQPSNEVNLLDSKTIQGELGWISYPSHGWEEISGVDEHYTPIRTYQVCNVMDHSQNNWLRTNWVPRNSAQKIYVELKFTLRDCNSIPLVLGTCKETFNLYYMESDDHGVKFREHQFTKIDTIAADESFTQMDLGDRILKLNTEIREVGPVNKKGFYLAFQDVGACVALVSVRVYFKKCPFTVKNLAMFPDTVPMDSQSLVEVRGSCVNNSKEEDPPRMYCSTEGEWLVPIGKCTCNAGYEERGFICQACRPGFYKASDGAAKCAKCPPHSSTQEDGSMNCRCENNYFRAEKDPPSMACARPPSAPRNVISNINETSVILDWSWPLDTGGRKDITFNIICKKCGWNVRQCEPCSPNVRFLPRQLGLTNTTVTVTDLLAHTNYTFEIDAVNGVSELSSPPRQYAAVSITTNQAAPSPVMTIKKDRTSRNSISLSWQEPEHPNGIILDYEVKYYQKQEQETSYTILRARGTNVTISSLKPDTTYVFQIRARTAAGYGTNSRKFEFETSPDSFSISGENSHVVMIAISAAVAIIVLTVVTYVLVGRFCGYHKSKHSAEEKRLHFGNGHLKLPGLRTYVDPHTYEDPTQAVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPEMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAMSYRKFTSASDVWSYGIVLWEVMSYGERPYSQMSNQDVIKAVDERYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNPGSLKIITSAAARPSNLLLDQSNVDIATFHTTGDWLNGMRTAHCKEIFTGVEYSSCDTIAKISTDDMKKVGVTVVGPQKKIISTIKALETQSKNGPVPV

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

C07_A_2(4G2F)

[Raw transfer]




AS6_A_2(2XVD)

[Raw transfer]




ANP_D_4(1MQB)

[Raw transfer]




7X6_A_2(2VWZ)

[Raw transfer]




ADP_D_12(2HEN)

[Raw transfer]




IHZ_A_2(3DKO)

[Raw transfer]




7X4_A_2(2VWX)

[Raw transfer]




1N1_A_2(2Y6O)

[Raw transfer]




7X8_A_2(2VX1)

[Raw transfer]




7X5_A_2(2VWY)

[Raw transfer]




ADP_B_10(2HEN)
EPHB2_MOUSE
[Raw transfer]




IFC_A_2(3DZQ)

[Raw transfer]




32W_A_2(4BB4)

[Raw transfer]




ADP_C_11(2HEN)
EPHB2_MOUSE
[Raw transfer]




GOL_A_6(2XYU)

[Raw transfer]




X9F_A_2(2X9F)

[Raw transfer]




Q9G_A_8(2XYU)

[Raw transfer]




ANP_A_5(2QOC)

[Raw transfer]




GOL_A_3(2Y6M)

[Raw transfer]




ADP_A_9(2HEN)
EPHB2_MOUSE
[Raw transfer]




ANP_C_3(1MQB)
EPHA2_HUMAN
[Raw transfer]




7X7_A_2(2VX0)

[Raw transfer]




STU_A_3(2YN8)
EPHB4_HUMAN
[Raw transfer]




STU_B_4(2YN8)

[Raw transfer]




30K_A_2(4AW5)

[Raw transfer]




ANP_D_4(1JPA)

[Raw transfer]




ANP_C_3(1JPA)
EPHB2_MOUSE
[Raw transfer]




CHAIN_B_2(3FXX)

[Raw transfer]

-

CHAIN_B_2(3FY2)

[Raw transfer]

-

3 PsiBlast_PDB 70.2896%-105 - C2 -3FXX 7.6
4 PsiBlast_PDB 69.7196%-106 - C2 -3FY2 6.6
9 PsiBlast_PDB 69.3396%-105 - C2 -2QOC 5.2
10 PsiBlast_PDB 68.4096%-109 - C2 -3DZQ 10.7
11 PsiBlast_PDB 67.6296%-105 - C2 -4G2F 5.7
28 PsiBlast_CBE 59.1984%-106 - C2 -2XYU 6.9
24 PsiBlast_CBE 59.1484%-105 - C2 -2Y6O 7.2
27 PsiBlast_CBE 59.0976%-102 - C2 -1JPA 4.1 EPHB2_MOUSE
26 PsiBlast_CBE 58.3476%-100 - C2 -1JPA 4.1
25 PsiBlast_CBE 58.0284%-101 - C2 -2Y6M 2.6
22 PsiBlast_CBE 57.5679% -98 - C2 -3DKO 8.3
36 PsiBlast_CBE 56.7772%-103 - C2 -4BB4 6.5
43 PsiBlast_CBE 56.6672% -98 - C2 -2VWX 6.4
39 PsiBlast_CBE 56.6572% -99 * C2 *2VX1 7.2
34 PsiBlast_CBE 56.3475%-105 - C2 -2YN8 8.5
35 PsiBlast_CBE 56.0475%-107 - C2 -2YN8 8.5 EPHB4_HUMAN
40 PsiBlast_CBE 55.9372% -97 - C2 -2VX0 7.2
42 PsiBlast_CBE 55.5272% -97 - C2 -2VWY 6.7
41 PsiBlast_CBE 55.2772% -95 - C2 -2VWZ 7.2
33 PsiBlast_CBE 55.1178%-100 - C2 -2HEN 4.6 EPHB2_MOUSE
44 PsiBlast_CBE 54.8675%-100 - C2 -4AW5 7.3
30 PsiBlast_CBE 54.8078%-100 - C2 -2HEN 5.6
38 PsiBlast_CBE 54.6972% -98 - C2 -2X9F 6.1
32 PsiBlast_CBE 54.5578%-100 - C2 -2HEN 5.4 EPHB2_MOUSE
31 PsiBlast_CBE 54.1378% -98 - C2 -2HEN 4.9 EPHB2_MOUSE
45 PsiBlast_CBE 53.2371%-100 - C2 -1MQB 4.4
37 PsiBlast_CBE 52.6172% -96 - C2 -2XVD 6.8
46 PsiBlast_CBE 49.5271% -98 - C2 -1MQB 4.1 EPHA2_HUMAN