@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF07647_EPHA4_HUMAN: (2014-10-11 )
MAGIFYFALFSCLFGICDAVTGSRVYPANEVTLLDSRSVQGELGWIASPLEGGWEEVSIMDEKNTPIRTYQVCNVMEPSQNNWLRTDWITREGAQRVYIEIKFTLRDCNSLPGVMGTCKETFNLYYYESDNDKERFIRENQFVKIDTIAADESFTQVDIGDRIMKLNTEIRDVGPLSKKGFYLAFQDVGACIALVSVRVFYKKCPLTVRNLAQFPDTITGADTSSLVEVRGSCVNNSEEKDVPKMYCGADGEWLVPIGNCLCNAGHEERSGECQACKIGYYKALSTDATCAKCPPHSYSVWEGATSCTCDRGFFRADNDAASMPCTRPPSAPLNLISNVNETSVNLEWSSPQNTGGRQDISYNVVCKKCGAGDPSKCRPCGSGVHYTPQQNGLKTTKVSITDLLAHTNYTFEIWAVNGVSKYNPNPDQSVSVTVTTNQAAPSSIALVQAKEVTRYSVALAWLEPDRPNGVILEYEVKYYEKDQNERSYRIVRTAARNTDIKGLNPLTSYVFHVRARTAAGYGDFSEPLEVTTNTVPSRIIGDGANSTVLLVSVSGSVVLVVILIAAFVISRRRSKYSKAKQEADEEKHLNQGVRTYVDPFTYEDPNQAVREFAKEIDASCIKIEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLSDMSYVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEGYRLPPPMDCPIALHQLMLDCWQKERSDRPKFGQIVNMLDKLIRNPNSLKRTGTESSRPNTALLDPSSPEFSAVVSVGDWLQAIKMDRYKDNFTAAGYTTLEAVVHVNQEDLARIGITAITHQNKILSSVQAMRTQMQQMHGRMVPV

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

7X6_A_2(2VWZ)

[Raw transfer]



AS6_A_2(2XVD)

[Raw transfer]



C07_A_2(4G2F)

[Raw transfer]



ANP_D_4(1MQB)

[Raw transfer]



7X4_A_2(2VWX)

[Raw transfer]



7X8_A_2(2VX1)

[Raw transfer]



7X5_A_2(2VWY)

[Raw transfer]



ADP_D_12(2HEN)

[Raw transfer]



X9F_A_2(2X9F)

[Raw transfer]



7X7_A_2(2VX0)

[Raw transfer]



IHZ_A_2(3DKO)

[Raw transfer]



ADP_B_10(2HEN)
EPHB2_MOUSE
[Raw transfer]



32W_A_2(4BB4)

[Raw transfer]



GOL_A_6(2XYU)

[Raw transfer]



ANP_C_3(1MQB)
EPHA2_HUMAN
[Raw transfer]



ADP_C_11(2HEN)
EPHB2_MOUSE
[Raw transfer]



IFC_A_2(3DZQ)

[Raw transfer]



STU_A_3(2YN8)
EPHB4_HUMAN
[Raw transfer]



ADP_A_9(2HEN)
EPHB2_MOUSE
[Raw transfer]



GOL_A_5(3KUL)
EPHA8_HUMAN
[Raw transfer]



ANP_A_5(2QOC)

[Raw transfer]



STU_B_4(2YN8)

[Raw transfer]



30K_A_2(4AW5)

[Raw transfer]



ANP_D_4(1JPA)

[Raw transfer]



ANP_C_3(1JPA)
EPHB2_MOUSE
[Raw transfer]



CHAIN_B_2(3FXX)

[Raw transfer]
-
CHAIN_B_2(3FY2)

[Raw transfer]
-
14 PsiBlast_PDB 54.0575%-110 - C2 -3FY2 6.2
10 PsiBlast_PDB 53.9899%-119 - C2 -2XYU 2.4
13 PsiBlast_PDB 52.6075%-107 - C2 -3FXX 7.4
20 PsiBlast_PDB 50.7575%-112 - C2 -3DZQ 10.8
19 PsiBlast_PDB 50.5475%-105 - C2 -2QOC 5.2
30 PsiBlast_CBE 50.0681%-110 - C2 -1JPA 4.2
31 PsiBlast_CBE 50.0581%-108 - C2 -1JPA 4.1 EPHB2_MOUSE
44 PsiBlast_CBE 49.9876%-106 * C2 *2VX1 7.3
27 PsiBlast_CBE 49.7075%-108 - C2 -4G2F 5.7
48 PsiBlast_CBE 49.3476%-105 - C2 -2VWX 6.4
41 PsiBlast_CBE 48.5276%-110 - C2 -4BB4 6.7
45 PsiBlast_CBE 48.3776%-104 - C2 -2VX0 7.4
47 PsiBlast_CBE 48.2676%-103 - C2 -2VWY 6.7
49 PsiBlast_CBE 48.1777%-108 - C2 -4AW5 7.4
46 PsiBlast_CBE 48.1076%-102 - C2 -2VWZ 7.4
43 PsiBlast_CBE 48.0576%-106 - C2 -2X9F 6.3
38 PsiBlast_CBE 47.8178%-113 - C2 -2YN8 8.9
34 PsiBlast_CBE 47.5383%-107 - C2 -2HEN 5.6
28 PsiBlast_CBE 47.2781%-104 - C2 -3DKO 8.4
36 PsiBlast_CBE 47.2583%-107 - C2 -2HEN 5.5 EPHB2_MOUSE
37 PsiBlast_CBE 47.1083%-107 - C2 -2HEN 4.7 EPHB2_MOUSE
39 PsiBlast_CBE 46.6478%-113 - C2 -2YN8 8.5 EPHB4_HUMAN
50 PsiBlast_CBE 46.5374%-110 - C2 -1MQB 4.5
35 PsiBlast_CBE 46.1983%-104 - C2 -2HEN 5.1 EPHB2_MOUSE
42 PsiBlast_CBE 45.9176%-103 - C2 -2XVD 7.0
40 PsiBlast_CBE 44.1173%-106 - C2 -3KUL 2.9 EPHA8_HUMAN
51 PsiBlast_CBE 43.3574%-108 - C2 -1MQB 4.0 EPHA2_HUMAN